miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 72083 1.09 0.003678
Target:  5'- gGUGGAAUGGUGGCGUGGAACCUCCGGc -3'
miRNA:   3'- -CACCUUACCACCGCACCUUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 153529 0.76 0.430201
Target:  5'- aUGGAGUGGggGGCGUGGGGCugCUUgGGa -3'
miRNA:   3'- cACCUUACCa-CCGCACCUUG--GAGgCC- -5'
28832 5' -55.7 NC_006146.1 + 140131 0.75 0.494274
Target:  5'- gGUGGcggaGGUGGUGGCGgGGGugCcCCGGg -3'
miRNA:   3'- -CACC----UUACCACCGCaCCUugGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 51895 0.73 0.582316
Target:  5'- gGUGGAGgcUGcGUcGGCG-GGGGCCUCCGa -3'
miRNA:   3'- -CACCUU--AC-CA-CCGCaCCUUGGAGGCc -5'
28832 5' -55.7 NC_006146.1 + 12902 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 15979 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 19057 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 22135 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 28291 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 25213 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 38408 0.72 0.68308
Target:  5'- aUGGggUGGUGGCaucUGGGAUUagCGGg -3'
miRNA:   3'- cACCuuACCACCGc--ACCUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 65504 0.71 0.693064
Target:  5'- cGUGGGGcUGGuUGGUGUGGggUCUUCa- -3'
miRNA:   3'- -CACCUU-ACC-ACCGCACCuuGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 18865 0.71 0.693064
Target:  5'- -cGGggUGGUGGaCGUgcgGGGGCCUCa-- -3'
miRNA:   3'- caCCuuACCACC-GCA---CCUUGGAGgcc -5'
28832 5' -55.7 NC_006146.1 + 55019 0.71 0.722685
Target:  5'- -cGGGAUGGgggcgGGCGggaugGGggUCggggCCGGg -3'
miRNA:   3'- caCCUUACCa----CCGCa----CCuuGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 141598 0.7 0.779637
Target:  5'- ------cGGUGGUG-GGAgcaGCCUCCGGa -3'
miRNA:   3'- caccuuaCCACCGCaCCU---UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 49592 0.7 0.788729
Target:  5'- gGUGGGgcuGUGGaUGGUGUGGAACacaaUCUGu -3'
miRNA:   3'- -CACCU---UACC-ACCGCACCUUGg---AGGCc -5'
28832 5' -55.7 NC_006146.1 + 89942 0.7 0.796795
Target:  5'- gGUGGggUGGUGGguacagGUGGAuugucagauggGCCUggcugggCCGGg -3'
miRNA:   3'- -CACCuuACCACCg-----CACCU-----------UGGA-------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 67591 0.69 0.806492
Target:  5'- uUGGGGggcccGUGGCGUuuGGCCUCCGGu -3'
miRNA:   3'- cACCUUac---CACCGCAccUUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 40341 0.69 0.815147
Target:  5'- cGUGG--UGGUaGGCGUGGgGAUCUgCGGc -3'
miRNA:   3'- -CACCuuACCA-CCGCACC-UUGGAgGCC- -5'
28832 5' -55.7 NC_006146.1 + 43629 0.69 0.815147
Target:  5'- -gGGAGUGGgcggcggGGCGUGGccGCCUggggagaggggcCCGGc -3'
miRNA:   3'- caCCUUACCa------CCGCACCu-UGGA------------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.