miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 12902 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 15979 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 18865 0.71 0.693064
Target:  5'- -cGGggUGGUGGaCGUgcgGGGGCCUCa-- -3'
miRNA:   3'- caCCuuACCACC-GCA---CCUUGGAGgcc -5'
28832 5' -55.7 NC_006146.1 + 19057 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 22135 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 25213 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 27617 0.67 0.904399
Target:  5'- -cGGGuccacugGGUGGCcagGGAAgUUCCGGg -3'
miRNA:   3'- caCCUua-----CCACCGca-CCUUgGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 28291 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 32421 0.66 0.941891
Target:  5'- cUGGAAUauaGGggcGGCGUuaGGAuACCUCCaGGa -3'
miRNA:   3'- cACCUUA---CCa--CCGCA--CCU-UGGAGG-CC- -5'
28832 5' -55.7 NC_006146.1 + 33229 0.67 0.910451
Target:  5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3'
miRNA:   3'- caCCUUACCaCCGcACCuuGgAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33481 0.68 0.848067
Target:  5'- -cGGGAaGGgaggGGCGUGGu-CC-CCGGg -3'
miRNA:   3'- caCCUUaCCa---CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33648 0.67 0.904399
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGg -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33835 0.67 0.916272
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGa -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 35888 0.68 0.877938
Target:  5'- -gGGggUGGUGGgGUGacgcGGACCa-CGGg -3'
miRNA:   3'- caCCuuACCACCgCAC----CUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 38408 0.72 0.68308
Target:  5'- aUGGggUGGUGGCaucUGGGAUUagCGGg -3'
miRNA:   3'- cACCuuACCACCGc--ACCUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 40341 0.69 0.815147
Target:  5'- cGUGG--UGGUaGGCGUGGgGAUCUgCGGc -3'
miRNA:   3'- -CACCuuACCA-CCGCACC-UUGGAgGCC- -5'
28832 5' -55.7 NC_006146.1 + 42279 0.69 0.840106
Target:  5'- -aGGAuggGUGGUGGCGgggaggaGGAGCgggagCCGGa -3'
miRNA:   3'- caCCU---UACCACCGCa------CCUUGga---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 43629 0.69 0.815147
Target:  5'- -gGGAGUGGgcggcggGGCGUGGccGCCUggggagaggggcCCGGc -3'
miRNA:   3'- caCCUUACCa------CCGCACCu-UGGA------------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 44309 0.67 0.910451
Target:  5'- -cGGuAGUGGgGGC-UGGGGCCguggcagCCGGg -3'
miRNA:   3'- caCC-UUACCaCCGcACCUUGGa------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 47987 0.68 0.870778
Target:  5'- cGUGGGGucagagguggcUGGUGGCG-GGAGgCUUggCGGg -3'
miRNA:   3'- -CACCUU-----------ACCACCGCaCCUUgGAG--GCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.