Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28832 | 5' | -55.7 | NC_006146.1 | + | 12902 | 0.73 | 0.632709 |
Target: 5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3' miRNA: 3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 15979 | 0.73 | 0.632709 |
Target: 5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3' miRNA: 3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 18865 | 0.71 | 0.693064 |
Target: 5'- -cGGggUGGUGGaCGUgcgGGGGCCUCa-- -3' miRNA: 3'- caCCuuACCACC-GCA---CCUUGGAGgcc -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 19057 | 0.73 | 0.632709 |
Target: 5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3' miRNA: 3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 22135 | 0.73 | 0.632709 |
Target: 5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3' miRNA: 3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 25213 | 0.73 | 0.632709 |
Target: 5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3' miRNA: 3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 27617 | 0.67 | 0.904399 |
Target: 5'- -cGGGuccacugGGUGGCcagGGAAgUUCCGGg -3' miRNA: 3'- caCCUua-----CCACCGca-CCUUgGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 28291 | 0.73 | 0.632709 |
Target: 5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3' miRNA: 3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 32421 | 0.66 | 0.941891 |
Target: 5'- cUGGAAUauaGGggcGGCGUuaGGAuACCUCCaGGa -3' miRNA: 3'- cACCUUA---CCa--CCGCA--CCU-UGGAGG-CC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 33229 | 0.67 | 0.910451 |
Target: 5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3' miRNA: 3'- caCCUUACCaCCGcACCuuGgAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 33481 | 0.68 | 0.848067 |
Target: 5'- -cGGGAaGGgaggGGCGUGGu-CC-CCGGg -3' miRNA: 3'- caCCUUaCCa---CCGCACCuuGGaGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 33648 | 0.67 | 0.904399 |
Target: 5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGg -3' miRNA: 3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 33835 | 0.67 | 0.916272 |
Target: 5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGa -3' miRNA: 3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 35888 | 0.68 | 0.877938 |
Target: 5'- -gGGggUGGUGGgGUGacgcGGACCa-CGGg -3' miRNA: 3'- caCCuuACCACCgCAC----CUUGGagGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 38408 | 0.72 | 0.68308 |
Target: 5'- aUGGggUGGUGGCaucUGGGAUUagCGGg -3' miRNA: 3'- cACCuuACCACCGc--ACCUUGGagGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 40341 | 0.69 | 0.815147 |
Target: 5'- cGUGG--UGGUaGGCGUGGgGAUCUgCGGc -3' miRNA: 3'- -CACCuuACCA-CCGCACC-UUGGAgGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 42279 | 0.69 | 0.840106 |
Target: 5'- -aGGAuggGUGGUGGCGgggaggaGGAGCgggagCCGGa -3' miRNA: 3'- caCCU---UACCACCGCa------CCUUGga---GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 43629 | 0.69 | 0.815147 |
Target: 5'- -gGGAGUGGgcggcggGGCGUGGccGCCUggggagaggggcCCGGc -3' miRNA: 3'- caCCUUACCa------CCGCACCu-UGGA------------GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 44309 | 0.67 | 0.910451 |
Target: 5'- -cGGuAGUGGgGGC-UGGGGCCguggcagCCGGg -3' miRNA: 3'- caCC-UUACCaCCGcACCUUGGa------GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 47987 | 0.68 | 0.870778 |
Target: 5'- cGUGGGGucagagguggcUGGUGGCG-GGAGgCUUggCGGg -3' miRNA: 3'- -CACCUU-----------ACCACCGCaCCUUgGAG--GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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