miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28833 3' -61.7 NC_006146.1 + 122805 0.66 0.738559
Target:  5'- gCGGCCGAGGCCgCGcugucGGCCGccgugagcgaguACGuGGaCCg -3'
miRNA:   3'- -GCCGGCUCUGG-GU-----CCGGC------------UGU-CCaGG- -5'
28833 3' -61.7 NC_006146.1 + 68925 0.66 0.738559
Target:  5'- uGGaCGAGACCgGGGCCu--GGGcCCa -3'
miRNA:   3'- gCCgGCUCUGGgUCCGGcugUCCaGG- -5'
28833 3' -61.7 NC_006146.1 + 155316 0.66 0.738559
Target:  5'- aGGCCGc-GCCCucGCCGACGcgccuGUCCu -3'
miRNA:   3'- gCCGGCucUGGGucCGGCUGUc----CAGG- -5'
28833 3' -61.7 NC_006146.1 + 45525 0.66 0.738559
Target:  5'- aCGGUgGGGGCCUGGGCCuccuugGGCuuGG-CCg -3'
miRNA:   3'- -GCCGgCUCUGGGUCCGG------CUGu-CCaGG- -5'
28833 3' -61.7 NC_006146.1 + 60620 0.66 0.738559
Target:  5'- -cGCCGAGGCCaucauGGCaGACGGGgcUCUg -3'
miRNA:   3'- gcCGGCUCUGGgu---CCGgCUGUCC--AGG- -5'
28833 3' -61.7 NC_006146.1 + 136711 0.66 0.738559
Target:  5'- cCGGCgGGGGguggCC-GGCCGcugcCGGGUCCg -3'
miRNA:   3'- -GCCGgCUCUg---GGuCCGGCu---GUCCAGG- -5'
28833 3' -61.7 NC_006146.1 + 53000 0.66 0.738559
Target:  5'- cCGGCCGuGGCCgCggGGGUCGAugaccagccuCGGGUgCCc -3'
miRNA:   3'- -GCCGGCuCUGG-G--UCCGGCU----------GUCCA-GG- -5'
28833 3' -61.7 NC_006146.1 + 13897 0.66 0.733012
Target:  5'- aCGGCCGAGGCCgCgcgugacuuuuuggaAGGagUGGCGGGUgggcCCg -3'
miRNA:   3'- -GCCGGCUCUGG-G---------------UCCg-GCUGUCCA----GG- -5'
28833 3' -61.7 NC_006146.1 + 13557 0.66 0.729298
Target:  5'- gGcGCCG-GGCgCCGGGCUGcgcaaGCAGG-CCg -3'
miRNA:   3'- gC-CGGCuCUG-GGUCCGGC-----UGUCCaGG- -5'
28833 3' -61.7 NC_006146.1 + 110882 0.66 0.729298
Target:  5'- gGGCUcGGGCgCAGGCgggGACGGGgCCg -3'
miRNA:   3'- gCCGGcUCUGgGUCCGg--CUGUCCaGG- -5'
28833 3' -61.7 NC_006146.1 + 54059 0.66 0.729298
Target:  5'- uGGUCaGGGCCCAccuGGCCGcCGcGUCCc -3'
miRNA:   3'- gCCGGcUCUGGGU---CCGGCuGUcCAGG- -5'
28833 3' -61.7 NC_006146.1 + 129118 0.66 0.728368
Target:  5'- gGGCCuGAGagcgggcGCCCGGGC--GCAGGgccUCCg -3'
miRNA:   3'- gCCGG-CUC-------UGGGUCCGgcUGUCC---AGG- -5'
28833 3' -61.7 NC_006146.1 + 13846 0.66 0.719963
Target:  5'- cCGGCCGgagGGACCCcggcGGCCcGGugugcCAGcGUCCc -3'
miRNA:   3'- -GCCGGC---UCUGGGu---CCGG-CU-----GUC-CAGG- -5'
28833 3' -61.7 NC_006146.1 + 20001 0.66 0.719963
Target:  5'- cCGGCCGgagGGACCCcggcGGCCcGGugugcCAGcGUCCc -3'
miRNA:   3'- -GCCGGC---UCUGGGu---CCGG-CU-----GUC-CAGG- -5'
28833 3' -61.7 NC_006146.1 + 16924 0.66 0.719963
Target:  5'- cCGGCCGgagGGACCCcggcGGCCcGGugugcCAGcGUCCc -3'
miRNA:   3'- -GCCGGC---UCUGGGu---CCGG-CU-----GUC-CAGG- -5'
28833 3' -61.7 NC_006146.1 + 53337 0.66 0.719963
Target:  5'- aGGcCCGGcGGCCgCGGGgCGGCgugAGGUCUu -3'
miRNA:   3'- gCC-GGCU-CUGG-GUCCgGCUG---UCCAGG- -5'
28833 3' -61.7 NC_006146.1 + 26157 0.66 0.719963
Target:  5'- cCGGCCGgagGGACCCcggcGGCCcGGugugcCAGcGUCCc -3'
miRNA:   3'- -GCCGGC---UCUGGGu---CCGG-CU-----GUC-CAGG- -5'
28833 3' -61.7 NC_006146.1 + 23079 0.66 0.719963
Target:  5'- cCGGCCGgagGGACCCcggcGGCCcGGugugcCAGcGUCCc -3'
miRNA:   3'- -GCCGGC---UCUGGGu---CCGG-CU-----GUC-CAGG- -5'
28833 3' -61.7 NC_006146.1 + 29235 0.66 0.719963
Target:  5'- cCGGCCGgagGGACCCcggcGGCCcGGugugcCAGcGUCCc -3'
miRNA:   3'- -GCCGGC---UCUGGGu---CCGG-CU-----GUC-CAGG- -5'
28833 3' -61.7 NC_006146.1 + 125800 0.66 0.719962
Target:  5'- cCGGCCGAG-CCgGagaauGGCCGGCAcccUCCc -3'
miRNA:   3'- -GCCGGCUCuGGgU-----CCGGCUGUcc-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.