miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28833 5' -57.2 NC_006146.1 + 70166 0.66 0.900299
Target:  5'- cCGGGGCgCUgguggCCGGCGaGGCC--GGUCc -3'
miRNA:   3'- -GCUCUG-GAa----GGCCGC-CCGGaaCUAGu -5'
28833 5' -57.2 NC_006146.1 + 120593 0.66 0.893907
Target:  5'- --uGACCUggacaaggcCCGGCGGcGCCUgacaGAUCu -3'
miRNA:   3'- gcuCUGGAa--------GGCCGCC-CGGAa---CUAGu -5'
28833 5' -57.2 NC_006146.1 + 127220 0.66 0.893907
Target:  5'- aGuGGCCUUCuCGGaGGGCCUgGAg-- -3'
miRNA:   3'- gCuCUGGAAG-GCCgCCCGGAaCUagu -5'
28833 5' -57.2 NC_006146.1 + 157724 0.66 0.887294
Target:  5'- gCGAGGCCgggcaggCCGGgcaggcCGGGUCUUGGg-- -3'
miRNA:   3'- -GCUCUGGaa-----GGCC------GCCCGGAACUagu -5'
28833 5' -57.2 NC_006146.1 + 142335 0.66 0.887294
Target:  5'- gCGAGGCCgggcaggCCGGgcaggcCGGGUCUUGGg-- -3'
miRNA:   3'- -GCUCUGGaa-----GGCC------GCCCGGAACUagu -5'
28833 5' -57.2 NC_006146.1 + 145413 0.66 0.887294
Target:  5'- gCGAGGCCgggcaggCCGGgcaggcCGGGUCUUGGg-- -3'
miRNA:   3'- -GCUCUGGaa-----GGCC------GCCCGGAACUagu -5'
28833 5' -57.2 NC_006146.1 + 148491 0.66 0.887294
Target:  5'- gCGAGGCCgggcaggCCGGgcaggcCGGGUCUUGGg-- -3'
miRNA:   3'- -GCUCUGGaa-----GGCC------GCCCGGAACUagu -5'
28833 5' -57.2 NC_006146.1 + 151569 0.66 0.887294
Target:  5'- gCGAGGCCgggcaggCCGGgcaggcCGGGUCUUGGg-- -3'
miRNA:   3'- -GCUCUGGaa-----GGCC------GCCCGGAACUagu -5'
28833 5' -57.2 NC_006146.1 + 154647 0.66 0.887294
Target:  5'- gCGAGGCCgggcaggCCGGgcaggcCGGGUCUUGGg-- -3'
miRNA:   3'- -GCUCUGGaa-----GGCC------GCCCGGAACUagu -5'
28833 5' -57.2 NC_006146.1 + 157063 0.66 0.880463
Target:  5'- cCGGGGuCCcUCCGGCcGGCCU-GAUgGa -3'
miRNA:   3'- -GCUCU-GGaAGGCCGcCCGGAaCUAgU- -5'
28833 5' -57.2 NC_006146.1 + 153985 0.66 0.880463
Target:  5'- cCGGGGuCCcUCCGGCcGGCCU-GAUgGa -3'
miRNA:   3'- -GCUCU-GGaAGGCCGcCCGGAaCUAgU- -5'
28833 5' -57.2 NC_006146.1 + 150907 0.66 0.880463
Target:  5'- cCGGGGuCCcUCCGGCcGGCCU-GAUgGa -3'
miRNA:   3'- -GCUCU-GGaAGGCCGcCCGGAaCUAgU- -5'
28833 5' -57.2 NC_006146.1 + 147829 0.66 0.880463
Target:  5'- cCGGGGuCCcUCCGGCcGGCCU-GAUgGa -3'
miRNA:   3'- -GCUCU-GGaAGGCCGcCCGGAaCUAgU- -5'
28833 5' -57.2 NC_006146.1 + 144751 0.66 0.880463
Target:  5'- cCGGGGuCCcUCCGGCcGGCCU-GAUgGa -3'
miRNA:   3'- -GCUCU-GGaAGGCCGcCCGGAaCUAgU- -5'
28833 5' -57.2 NC_006146.1 + 141674 0.66 0.880463
Target:  5'- cCGGGGuCCcUCCGGCcGGCCU-GAUgGa -3'
miRNA:   3'- -GCUCU-GGaAGGCCGcCCGGAaCUAgU- -5'
28833 5' -57.2 NC_006146.1 + 109600 0.66 0.880463
Target:  5'- -uGGACaggaCGGCcaGGGCCUUGGUCu -3'
miRNA:   3'- gcUCUGgaagGCCG--CCCGGAACUAGu -5'
28833 5' -57.2 NC_006146.1 + 158135 0.66 0.866169
Target:  5'- uGGGACCUgguggcgcccgCCGGCuccaaccucGGGCCUcugggcUGGUCu -3'
miRNA:   3'- gCUCUGGAa----------GGCCG---------CCCGGA------ACUAGu -5'
28833 5' -57.2 NC_006146.1 + 155056 0.66 0.866169
Target:  5'- uGGGACCUgguggcgcccgCCGGCuccaaccucGGGCCUcugggcUGGUCu -3'
miRNA:   3'- gCUCUGGAa----------GGCCG---------CCCGGA------ACUAGu -5'
28833 5' -57.2 NC_006146.1 + 151978 0.66 0.866169
Target:  5'- uGGGACCUgguggcgcccgCCGGCuccaaccucGGGCCUcugggcUGGUCu -3'
miRNA:   3'- gCUCUGGAa----------GGCCG---------CCCGGA------ACUAGu -5'
28833 5' -57.2 NC_006146.1 + 148900 0.66 0.866169
Target:  5'- uGGGACCUgguggcgcccgCCGGCuccaaccucGGGCCUcugggcUGGUCu -3'
miRNA:   3'- gCUCUGGAa----------GGCCG---------CCCGGA------ACUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.