miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 137505 0.66 0.942471
Target:  5'- gCCCAgGCggGCCAc--CCCCCACCcgGAGc -3'
miRNA:   3'- -GGGU-CG--UGGUacaGGGGGUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 121764 0.66 0.942471
Target:  5'- aCCguGCucucuucucucaAUC-UGUCCCCCACCAa--- -3'
miRNA:   3'- -GGguCG------------UGGuACAGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 30751 0.66 0.942471
Target:  5'- gCCCGcaaacuGUACCcgGggcaCCCCCGCCAc--- -3'
miRNA:   3'- -GGGU------CGUGGuaCa---GGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 139208 0.66 0.942471
Target:  5'- --uGGCAgCCGcgGUCCCCCACCc---- -3'
miRNA:   3'- gggUCGU-GGUa-CAGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 32753 0.66 0.941544
Target:  5'- aCCCAGUACCcaaagcccacauUG-CCCCCAuCCAg--- -3'
miRNA:   3'- -GGGUCGUGGu-----------ACaGGGGGU-GGUauuu -5'
28834 3' -55.1 NC_006146.1 + 48512 0.66 0.937739
Target:  5'- cUCCAGCACCuccgcGUUCCUgGCCGc--- -3'
miRNA:   3'- -GGGUCGUGGua---CAGGGGgUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 120045 0.66 0.937739
Target:  5'- gCCAaCGCCucucaUCCCCCACCAg--- -3'
miRNA:   3'- gGGUcGUGGuac--AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 156859 0.66 0.932766
Target:  5'- gCCGGCGCUugcgccUG-CCCCCGCCu---- -3'
miRNA:   3'- gGGUCGUGGu-----ACaGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 144634 0.66 0.932766
Target:  5'- aCCCAGgcuaauuccgcCAcCCGUG-CCCCCACCu---- -3'
miRNA:   3'- -GGGUC-----------GU-GGUACaGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 49570 0.66 0.932766
Target:  5'- gCCCAGCaugGCCucgAUGUCCUCCAggAUGAc -3'
miRNA:   3'- -GGGUCG---UGG---UACAGGGGGUggUAUUu -5'
28834 3' -55.1 NC_006146.1 + 137683 0.66 0.932766
Target:  5'- cCCCAGCcccauCCcgGcUCCCCCuCCGg--- -3'
miRNA:   3'- -GGGUCGu----GGuaC-AGGGGGuGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 126547 0.66 0.932766
Target:  5'- gUCUGGCACCucGUCCCCaucaGCCAc--- -3'
miRNA:   3'- -GGGUCGUGGuaCAGGGGg---UGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 2188 0.66 0.927549
Target:  5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3'
miRNA:   3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 1256 0.66 0.927549
Target:  5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3'
miRNA:   3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 25653 0.66 0.927549
Target:  5'- -aCGGCGCUggucGUGUCccaCCCCACCAa--- -3'
miRNA:   3'- ggGUCGUGG----UACAG---GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 55401 0.66 0.927549
Target:  5'- gCCAGCAUCAcggcguaGUCgCCCGCCGc--- -3'
miRNA:   3'- gGGUCGUGGUa------CAGgGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 50356 0.66 0.927549
Target:  5'- gCCAGCcuggggaucuugGCCAgcaGUCCCgCCGCCGc--- -3'
miRNA:   3'- gGGUCG------------UGGUa--CAGGG-GGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 3120 0.66 0.927549
Target:  5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3'
miRNA:   3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 114050 0.66 0.927014
Target:  5'- cCCCAGCcaaagcuGCCg---CCCCCGCCGc--- -3'
miRNA:   3'- -GGGUCG-------UGGuacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 35252 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.