Results 1 - 20 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28834 | 3' | -55.1 | NC_006146.1 | + | 69651 | 1.08 | 0.00389 |
Target: 5'- cCCCAGCACCAUGUCCCCCACCAUAAAg -3' miRNA: 3'- -GGGUCGUGGUACAGGGGGUGGUAUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 109067 | 0.8 | 0.26023 |
Target: 5'- uCCCGGCACCAgccccacUG-CCCCCACCAg--- -3' miRNA: 3'- -GGGUCGUGGU-------ACaGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 3395 | 0.77 | 0.368232 |
Target: 5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3' miRNA: 3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 600 | 0.77 | 0.368232 |
Target: 5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3' miRNA: 3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 122881 | 0.77 | 0.377266 |
Target: 5'- gCCGGCccGCCGUGccUCCCCCGCCAa--- -3' miRNA: 3'- gGGUCG--UGGUAC--AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 2463 | 0.77 | 0.368232 |
Target: 5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3' miRNA: 3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 1531 | 0.77 | 0.368232 |
Target: 5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3' miRNA: 3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 16226 | 0.76 | 0.456523 |
Target: 5'- aCCCAGCAgCCAgcGcCCCCCGCCAc--- -3' miRNA: 3'- -GGGUCGU-GGUa-CaGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 156269 | 0.75 | 0.504233 |
Target: 5'- -gCAGCACCAUGagcUCCCCCACgCAg--- -3' miRNA: 3'- ggGUCGUGGUAC---AGGGGGUG-GUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 169064 | 0.74 | 0.523919 |
Target: 5'- gCCUguGGCACCcggcUGUgCCCCGCCAUGAu -3' miRNA: 3'- -GGG--UCGUGGu---ACAgGGGGUGGUAUUu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 105414 | 0.73 | 0.615373 |
Target: 5'- --aAGuCACCAUGUCCgCCACUAUGGAa -3' miRNA: 3'- gggUC-GUGGUACAGGgGGUGGUAUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 165246 | 0.72 | 0.653565 |
Target: 5'- aCCC-GCGgcuggugcucguccCCcUGUCCCCCGCCAUGGc -3' miRNA: 3'- -GGGuCGU--------------GGuACAGGGGGUGGUAUUu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 66446 | 0.72 | 0.666948 |
Target: 5'- cCCCAGCAacauCCugGUGgauuucaCCCCCACCAUGu- -3' miRNA: 3'- -GGGUCGU----GG--UACa------GGGGGUGGUAUuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 104641 | 0.72 | 0.646344 |
Target: 5'- aCCC-GCgagACCcUGcCCCCCACCGUGGAg -3' miRNA: 3'- -GGGuCG---UGGuACaGGGGGUGGUAUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 137750 | 0.72 | 0.666948 |
Target: 5'- gCCCAGCcggGCCAc--CCCCCACCcgGAGc -3' miRNA: 3'- -GGGUCG---UGGUacaGGGGGUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 101321 | 0.72 | 0.66592 |
Target: 5'- cCCCAGgACC-UGgccaucuUCCCCCACCAg--- -3' miRNA: 3'- -GGGUCgUGGuAC-------AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 137627 | 0.72 | 0.666948 |
Target: 5'- gCCCAGCcggGCCAc--CCCCCACCcgGAGc -3' miRNA: 3'- -GGGUCG---UGGUacaGGGGGUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 100377 | 0.72 | 0.656656 |
Target: 5'- gCCgGGCAgCCAUGUCCUCCACg----- -3' miRNA: 3'- -GGgUCGU-GGUACAGGGGGUGguauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 168420 | 0.72 | 0.636021 |
Target: 5'- gCCAGCugCcUG-CCCCCGCCGg--- -3' miRNA: 3'- gGGUCGugGuACaGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 31509 | 0.72 | 0.634989 |
Target: 5'- cCCCGGCGCCGUGggggccuUCUCCUACUAa--- -3' miRNA: 3'- -GGGUCGUGGUAC-------AGGGGGUGGUauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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