miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 104641 0.72 0.646344
Target:  5'- aCCC-GCgagACCcUGcCCCCCACCGUGGAg -3'
miRNA:   3'- -GGGuCG---UGGuACaGGGGGUGGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 73663 0.72 0.677211
Target:  5'- gCCAGcCACCuuGUGUCCCCCAgC-UGGAg -3'
miRNA:   3'- gGGUC-GUGG--UACAGGGGGUgGuAUUU- -5'
28834 3' -55.1 NC_006146.1 + 100377 0.72 0.656656
Target:  5'- gCCgGGCAgCCAUGUCCUCCACg----- -3'
miRNA:   3'- -GGgUCGU-GGUACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 133005 0.71 0.707739
Target:  5'- cCCCAGCGCCGUGaaggcaggacUCUCCCAgcCCGg--- -3'
miRNA:   3'- -GGGUCGUGGUAC----------AGGGGGU--GGUauuu -5'
28834 3' -55.1 NC_006146.1 + 119173 0.71 0.697616
Target:  5'- aCCUcggGGCGCCGccuccccaUGUCCUCCACCAc--- -3'
miRNA:   3'- -GGG---UCGUGGU--------ACAGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 113117 0.71 0.717796
Target:  5'- cCCCGGgggauGCCAUGUCUUCCGCCGg--- -3'
miRNA:   3'- -GGGUCg----UGGUACAGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 138773 0.71 0.707739
Target:  5'- cCCCAGCACCccggggugacGUGgcaCCCCugCGUGc- -3'
miRNA:   3'- -GGGUCGUGG----------UACag-GGGGugGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 35168 0.71 0.707739
Target:  5'- cCCCuGCuaauCCAUGUgCCCCGCCuuUAGGa -3'
miRNA:   3'- -GGGuCGu---GGUACAgGGGGUGGu-AUUU- -5'
28834 3' -55.1 NC_006146.1 + 134798 0.71 0.697616
Target:  5'- aCCCAGCAgCggGUCCCCCuuCUAg--- -3'
miRNA:   3'- -GGGUCGUgGuaCAGGGGGu-GGUauuu -5'
28834 3' -55.1 NC_006146.1 + 129195 0.71 0.707739
Target:  5'- gCCaCAGCGCCGcacCCCCCGCCGg--- -3'
miRNA:   3'- -GG-GUCGUGGUacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 34943 0.71 0.707739
Target:  5'- cCCCAGCACCccggggugacGUGgcaCCCCugCGUGc- -3'
miRNA:   3'- -GGGUCGUGG----------UACag-GGGGugGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 30212 0.7 0.776245
Target:  5'- gCCAGaACCAg--CCCCCACUAUGGu -3'
miRNA:   3'- gGGUCgUGGUacaGGGGGUGGUAUUu -5'
28834 3' -55.1 NC_006146.1 + 55235 0.7 0.737679
Target:  5'- uCUCAGCuacagcuccACCAUGaCCCCCGCCcgGGu -3'
miRNA:   3'- -GGGUCG---------UGGUACaGGGGGUGGuaUUu -5'
28834 3' -55.1 NC_006146.1 + 33908 0.7 0.776245
Target:  5'- aCCCGGCagcgGCCcgGccaCCCCCGCCGg--- -3'
miRNA:   3'- -GGGUCG----UGGuaCa--GGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 76875 0.7 0.785582
Target:  5'- gCUCGGgGCCGUG-CCCCUGCCGg--- -3'
miRNA:   3'- -GGGUCgUGGUACaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 32834 0.7 0.737679
Target:  5'- gCCCGGCGuCCuUGcggcggccUCCCCCcCCAUGAAg -3'
miRNA:   3'- -GGGUCGU-GGuAC--------AGGGGGuGGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 41605 0.7 0.737679
Target:  5'- uUCCuGCACC-UGUCCCUgACCAa--- -3'
miRNA:   3'- -GGGuCGUGGuACAGGGGgUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 39276 0.7 0.785582
Target:  5'- uCCCGGCcacuACCAUcaCCCCCACUAc--- -3'
miRNA:   3'- -GGGUCG----UGGUAcaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 126128 0.7 0.785582
Target:  5'- cCCCGGC-CUggGUUCCCCGCCc---- -3'
miRNA:   3'- -GGGUCGuGGuaCAGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 136664 0.7 0.737679
Target:  5'- gCCCGGCGuCCuUGcggcggccUCCCCCcCCAUGAAg -3'
miRNA:   3'- -GGGUCGU-GGuAC--------AGGGGGuGGUAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.