miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 69651 1.08 0.00389
Target:  5'- cCCCAGCACCAUGUCCCCCACCAUAAAg -3'
miRNA:   3'- -GGGUCGUGGUACAGGGGGUGGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 109067 0.8 0.26023
Target:  5'- uCCCGGCACCAgccccacUG-CCCCCACCAg--- -3'
miRNA:   3'- -GGGUCGUGGU-------ACaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 3395 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 2463 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 600 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 1531 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 122881 0.77 0.377266
Target:  5'- gCCGGCccGCCGUGccUCCCCCGCCAa--- -3'
miRNA:   3'- gGGUCG--UGGUAC--AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 16226 0.76 0.456523
Target:  5'- aCCCAGCAgCCAgcGcCCCCCGCCAc--- -3'
miRNA:   3'- -GGGUCGU-GGUa-CaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 156269 0.75 0.504233
Target:  5'- -gCAGCACCAUGagcUCCCCCACgCAg--- -3'
miRNA:   3'- ggGUCGUGGUAC---AGGGGGUG-GUauuu -5'
28834 3' -55.1 NC_006146.1 + 169064 0.74 0.523919
Target:  5'- gCCUguGGCACCcggcUGUgCCCCGCCAUGAu -3'
miRNA:   3'- -GGG--UCGUGGu---ACAgGGGGUGGUAUUu -5'
28834 3' -55.1 NC_006146.1 + 105414 0.73 0.615373
Target:  5'- --aAGuCACCAUGUCCgCCACUAUGGAa -3'
miRNA:   3'- gggUC-GUGGUACAGGgGGUGGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 31509 0.72 0.634989
Target:  5'- cCCCGGCGCCGUGggggccuUCUCCUACUAa--- -3'
miRNA:   3'- -GGGUCGUGGUAC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 168420 0.72 0.636021
Target:  5'- gCCAGCugCcUG-CCCCCGCCGg--- -3'
miRNA:   3'- gGGUCGugGuACaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 104641 0.72 0.646344
Target:  5'- aCCC-GCgagACCcUGcCCCCCACCGUGGAg -3'
miRNA:   3'- -GGGuCG---UGGuACaGGGGGUGGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 165246 0.72 0.653565
Target:  5'- aCCC-GCGgcuggugcucguccCCcUGUCCCCCGCCAUGGc -3'
miRNA:   3'- -GGGuCGU--------------GGuACAGGGGGUGGUAUUu -5'
28834 3' -55.1 NC_006146.1 + 43408 0.72 0.656656
Target:  5'- cCCCGGCugCGa--CCCCCGCCGUc-- -3'
miRNA:   3'- -GGGUCGugGUacaGGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 100377 0.72 0.656656
Target:  5'- gCCgGGCAgCCAUGUCCUCCACg----- -3'
miRNA:   3'- -GGgUCGU-GGUACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 101321 0.72 0.66592
Target:  5'- cCCCAGgACC-UGgccaucuUCCCCCACCAg--- -3'
miRNA:   3'- -GGGUCgUGGuAC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 137750 0.72 0.666948
Target:  5'- gCCCAGCcggGCCAc--CCCCCACCcgGAGc -3'
miRNA:   3'- -GGGUCG---UGGUacaGGGGGUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 137627 0.72 0.666948
Target:  5'- gCCCAGCcggGCCAc--CCCCCACCcgGAGc -3'
miRNA:   3'- -GGGUCG---UGGUacaGGGGGUGGuaUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.