Results 21 - 40 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28834 | 3' | -55.1 | NC_006146.1 | + | 35438 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35531 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35624 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35066 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34602 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 131371 | 0.66 | 0.922089 |
Target: 5'- gCCCuuGCGCCGccUCCCCCAgcCCAUc-- -3' miRNA: 3'- -GGGu-CGUGGUacAGGGGGU--GGUAuuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 41809 | 0.66 | 0.922089 |
Target: 5'- gCCuggauuuGCACCcgGUCCCCUuuCUGUGAAa -3' miRNA: 3'- gGGu------CGUGGuaCAGGGGGu-GGUAUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 33859 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 33951 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35159 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35252 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34788 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34695 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35345 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34509 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34416 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34323 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34230 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34137 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34044 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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