miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 34788 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34695 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 33859 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 33951 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34044 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34137 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34230 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34416 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34509 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 34602 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 35252 0.66 0.922089
Target:  5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3'
miRNA:   3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 31464 0.66 0.92153
Target:  5'- cCCgGGCACCGUGggggccuUCUCCUACUAa--- -3'
miRNA:   3'- -GGgUCGUGGUAC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 84479 0.66 0.916386
Target:  5'- gCCCAGCugCc---CCCCUACCGa--- -3'
miRNA:   3'- -GGGUCGugGuacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 54016 0.66 0.916386
Target:  5'- gCCGGCACCAggUGgcgCCUCCggagggcgGCCAUGu- -3'
miRNA:   3'- gGGUCGUGGU--ACa--GGGGG--------UGGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 45285 0.66 0.916386
Target:  5'- aCCAGC-CCAUG--CCCCACCcucgGUGGAa -3'
miRNA:   3'- gGGUCGuGGUACagGGGGUGG----UAUUU- -5'
28834 3' -55.1 NC_006146.1 + 69070 0.66 0.916386
Target:  5'- gCCCgAGCGCUcgGg-CCCCGCCGa--- -3'
miRNA:   3'- -GGG-UCGUGGuaCagGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 152658 0.66 0.916386
Target:  5'- cCCCAgGCuguCCAUGagcUCCCCCagGCCGUc-- -3'
miRNA:   3'- -GGGU-CGu--GGUAC---AGGGGG--UGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 135010 0.66 0.916386
Target:  5'- uCCCGuGguCCGcGUCaCCCCACCAc--- -3'
miRNA:   3'- -GGGU-CguGGUaCAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 134262 0.66 0.916386
Target:  5'- cCCCcGCGCCuucacacagGUCCCCCuACguUGAAu -3'
miRNA:   3'- -GGGuCGUGGua-------CAGGGGG-UGguAUUU- -5'
28834 3' -55.1 NC_006146.1 + 111337 0.66 0.916386
Target:  5'- aCCuGCGCCGUGgCCCUCAUCu---- -3'
miRNA:   3'- gGGuCGUGGUACaGGGGGUGGuauuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.