miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 600 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 696 0.69 0.794778
Target:  5'- aCCCcGCGCUGg--CCCCCGCCAg--- -3'
miRNA:   3'- -GGGuCGUGGUacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 1012 0.67 0.91044
Target:  5'- aCCUGGCAacaAUGUUCCUCAUCAUGu- -3'
miRNA:   3'- -GGGUCGUgg-UACAGGGGGUGGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 1256 0.66 0.927549
Target:  5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3'
miRNA:   3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 1531 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 1627 0.69 0.794778
Target:  5'- aCCCcGCGCUGg--CCCCCGCCAg--- -3'
miRNA:   3'- -GGGuCGUGGUacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 2188 0.66 0.927549
Target:  5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3'
miRNA:   3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 2463 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 2559 0.69 0.794778
Target:  5'- aCCCcGCGCUGg--CCCCCGCCAg--- -3'
miRNA:   3'- -GGGuCGUGGUacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 3120 0.66 0.927549
Target:  5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3'
miRNA:   3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 3121 0.68 0.838346
Target:  5'- aUCCGGCACCGUgcGUCUCgaGCCAUGc- -3'
miRNA:   3'- -GGGUCGUGGUA--CAGGGggUGGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 3395 0.77 0.368232
Target:  5'- gCCCGGCGCCAgcccUGcccccucUCCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCGUGGU----AC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 3491 0.69 0.794778
Target:  5'- aCCCcGCGCUGg--CCCCCGCCAg--- -3'
miRNA:   3'- -GGGuCGUGGUacaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 6427 0.67 0.891171
Target:  5'- gCCCAGgGCCAUGUgggCCCUgGgguCCAUGGGg -3'
miRNA:   3'- -GGGUCgUGGUACA---GGGGgU---GGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 13804 0.69 0.803825
Target:  5'- cCCCGGCcCCccucagcuUGUCuCCCCACCGg--- -3'
miRNA:   3'- -GGGUCGuGGu-------ACAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 13867 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 14026 0.68 0.84571
Target:  5'- gUCCAGCcccguccACCcUGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG-------UGGuACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 16226 0.76 0.456523
Target:  5'- aCCCAGCAgCCAgcGcCCCCCGCCAc--- -3'
miRNA:   3'- -GGGUCGU-GGUa-CaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 16882 0.69 0.803825
Target:  5'- cCCCGGCcCCccucagcuUGUCuCCCCACCGg--- -3'
miRNA:   3'- -GGGUCGuGGu-------ACAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 16945 0.69 0.794778
Target:  5'- gCCCGGUguGCCAgcGUCCCCCcaGCCGc--- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGG--UGGUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.