miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 17104 0.68 0.84571
Target:  5'- gUCCAGCcccguccACCcUGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG-------UGGuACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 18025 0.69 0.803825
Target:  5'- gCCCuGCGCCcgGggccaCCUCCACCGUc-- -3'
miRNA:   3'- -GGGuCGUGGuaCa----GGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 18945 0.7 0.776245
Target:  5'- uCCCAaCACCcgGUCCCCCua-GUGGAc -3'
miRNA:   3'- -GGGUcGUGGuaCAGGGGGuggUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 19505 0.67 0.891171
Target:  5'- gCCGccGCGCCA--UCCCCCGCCu---- -3'
miRNA:   3'- gGGU--CGUGGUacAGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 19959 0.69 0.821436
Target:  5'- uCCCGGCcCCccucagcuUGUCuCCCCACCGg--- -3'
miRNA:   3'- -GGGUCGuGGu-------ACAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 20022 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 20182 0.68 0.84571
Target:  5'- gUCCAGCcccguccACCcUGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG-------UGGuACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 21103 0.69 0.803825
Target:  5'- gCCCuGCGCCcgGggccaCCUCCACCGUc-- -3'
miRNA:   3'- -GGGuCGUGGuaCa----GGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 22382 0.66 0.922089
Target:  5'- gCCAGCAgCAUGcUCUCCACCcUGGc -3'
miRNA:   3'- gGGUCGUgGUACaGGGGGUGGuAUUu -5'
28834 3' -55.1 NC_006146.1 + 23037 0.69 0.803825
Target:  5'- cCCCGGCcCCccucagcuUGUCuCCCCACCGg--- -3'
miRNA:   3'- -GGGUCGuGGu-------ACAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 23100 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 23260 0.68 0.84571
Target:  5'- gUCCAGCcccguccACCcUGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG-------UGGuACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 24181 0.69 0.803825
Target:  5'- gCCCuGCGCCcgGggccaCCUCCACCGUc-- -3'
miRNA:   3'- -GGGuCGUGGuaCa----GGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 25653 0.66 0.927549
Target:  5'- -aCGGCGCUggucGUGUCccaCCCCACCAa--- -3'
miRNA:   3'- ggGUCGUGG----UACAG---GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 26115 0.69 0.803825
Target:  5'- cCCCGGCcCCccucagcuUGUCuCCCCACCGg--- -3'
miRNA:   3'- -GGGUCGuGGu-------ACAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 26178 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 26338 0.68 0.84571
Target:  5'- gUCCAGCcccguccACCcUGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG-------UGGuACAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 27259 0.69 0.803825
Target:  5'- gCCCuGCGCCcgGggccaCCUCCACCGUc-- -3'
miRNA:   3'- -GGGuCGUGGuaCa----GGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 29193 0.69 0.803825
Target:  5'- cCCCGGCcCCccucagcuUGUCuCCCCACCGg--- -3'
miRNA:   3'- -GGGUCGuGGu-------ACAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 29256 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.