miRNA display CGI


Results 1 - 20 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 170460 0.67 0.904254
Target:  5'- aCCCGGgGgCGUGUCCCgCgACCcgAGGg -3'
miRNA:   3'- -GGGUCgUgGUACAGGG-GgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 169529 0.67 0.904254
Target:  5'- aCCCGGgGgCGUGUCCCgCgACCcgAGGg -3'
miRNA:   3'- -GGGUCgUgGUACAGGG-GgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 169064 0.74 0.523919
Target:  5'- gCCUguGGCACCcggcUGUgCCCCGCCAUGAu -3'
miRNA:   3'- -GGG--UCGUGGu---ACAgGGGGUGGUAUUu -5'
28834 3' -55.1 NC_006146.1 + 168597 0.67 0.904254
Target:  5'- aCCCGGgGgCGUGUCCCgCgACCcgAGGg -3'
miRNA:   3'- -GGGUCgUgGUACAGGG-GgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 168420 0.72 0.636021
Target:  5'- gCCAGCugCcUG-CCCCCGCCGg--- -3'
miRNA:   3'- gGGUCGugGuACaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 167664 0.66 0.922089
Target:  5'- gCCCGGgGgCGUGUCCCgCgACCcgAGGg -3'
miRNA:   3'- -GGGUCgUgGUACAGGG-GgUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 166379 0.68 0.869821
Target:  5'- gCCGGCACCGagaUGgucacCCCCCGCUg---- -3'
miRNA:   3'- gGGUCGUGGU---ACa----GGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 165246 0.72 0.653565
Target:  5'- aCCC-GCGgcuggugcucguccCCcUGUCCCCCGCCAUGGc -3'
miRNA:   3'- -GGGuCGU--------------GGuACAGGGGGUGGUAUUu -5'
28834 3' -55.1 NC_006146.1 + 161206 0.66 0.922089
Target:  5'- aCUGGCACCccGUgCCCCACUucAAAg -3'
miRNA:   3'- gGGUCGUGGuaCAgGGGGUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 156859 0.66 0.932766
Target:  5'- gCCGGCGCUugcgccUG-CCCCCGCCu---- -3'
miRNA:   3'- gGGUCGUGGu-----ACaGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 156269 0.75 0.504233
Target:  5'- -gCAGCACCAUGagcUCCCCCACgCAg--- -3'
miRNA:   3'- ggGUCGUGGUAC---AGGGGGUG-GUauuu -5'
28834 3' -55.1 NC_006146.1 + 155405 0.67 0.904254
Target:  5'- uCCCAGUacACCAcGUcCCCCCACaCGc--- -3'
miRNA:   3'- -GGGUCG--UGGUaCA-GGGGGUG-GUauuu -5'
28834 3' -55.1 NC_006146.1 + 152658 0.66 0.916386
Target:  5'- cCCCAgGCuguCCAUGagcUCCCCCagGCCGUc-- -3'
miRNA:   3'- -GGGU-CGu--GGUAC---AGGGGG--UGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 150033 0.7 0.766777
Target:  5'- cUCCAGCAUCGUG-CgCCCCugCAg--- -3'
miRNA:   3'- -GGGUCGUGGUACaG-GGGGugGUauuu -5'
28834 3' -55.1 NC_006146.1 + 146859 0.7 0.766777
Target:  5'- gCUCGGgGCCGcGUCaCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCgUGGUaCAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 144634 0.66 0.932766
Target:  5'- aCCCAGgcuaauuccgcCAcCCGUG-CCCCCACCu---- -3'
miRNA:   3'- -GGGUC-----------GU-GGUACaGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 139208 0.66 0.942471
Target:  5'- --uGGCAgCCGcgGUCCCCCACCc---- -3'
miRNA:   3'- gggUCGU-GGUa-CAGGGGGUGGuauuu -5'
28834 3' -55.1 NC_006146.1 + 138773 0.71 0.707739
Target:  5'- cCCCAGCACCccggggugacGUGgcaCCCCugCGUGc- -3'
miRNA:   3'- -GGGUCGUGG----------UACag-GGGGugGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 137750 0.72 0.666948
Target:  5'- gCCCAGCcggGCCAc--CCCCCACCcgGAGc -3'
miRNA:   3'- -GGGUCG---UGGUacaGGGGGUGGuaUUU- -5'
28834 3' -55.1 NC_006146.1 + 137683 0.66 0.932766
Target:  5'- cCCCAGCcccauCCcgGcUCCCCCuCCGg--- -3'
miRNA:   3'- -GGGUCGu----GGuaC-AGGGGGuGGUauuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.