miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 3' -55.1 NC_006146.1 + 109067 0.8 0.26023
Target:  5'- uCCCGGCACCAgccccacUG-CCCCCACCAg--- -3'
miRNA:   3'- -GGGUCGUGGU-------ACaGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 29256 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 146859 0.7 0.766777
Target:  5'- gCUCGGgGCCGcGUCaCCCCGCCAg--- -3'
miRNA:   3'- -GGGUCgUGGUaCAG-GGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 121764 0.66 0.942471
Target:  5'- aCCguGCucucuucucucaAUC-UGUCCCCCACCAa--- -3'
miRNA:   3'- -GGguCG------------UGGuACAGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 165246 0.72 0.653565
Target:  5'- aCCC-GCGgcuggugcucguccCCcUGUCCCCCGCCAUGGc -3'
miRNA:   3'- -GGGuCGU--------------GGuACAGGGGGUGGUAUUu -5'
28834 3' -55.1 NC_006146.1 + 43408 0.72 0.656656
Target:  5'- cCCCGGCugCGa--CCCCCGCCGUc-- -3'
miRNA:   3'- -GGGUCGugGUacaGGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 73663 0.72 0.677211
Target:  5'- gCCAGcCACCuuGUGUCCCCCAgC-UGGAg -3'
miRNA:   3'- gGGUC-GUGG--UACAGGGGGUgGuAUUU- -5'
28834 3' -55.1 NC_006146.1 + 134798 0.71 0.697616
Target:  5'- aCCCAGCAgCggGUCCCCCuuCUAg--- -3'
miRNA:   3'- -GGGUCGUgGuaCAGGGGGu-GGUauuu -5'
28834 3' -55.1 NC_006146.1 + 35168 0.71 0.707739
Target:  5'- cCCCuGCuaauCCAUGUgCCCCGCCuuUAGGa -3'
miRNA:   3'- -GGGuCGu---GGUACAgGGGGUGGu-AUUU- -5'
28834 3' -55.1 NC_006146.1 + 26178 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 13867 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 138773 0.71 0.707739
Target:  5'- cCCCAGCACCccggggugacGUGgcaCCCCugCGUGc- -3'
miRNA:   3'- -GGGUCGUGG----------UACag-GGGGugGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 156269 0.75 0.504233
Target:  5'- -gCAGCACCAUGagcUCCCCCACgCAg--- -3'
miRNA:   3'- ggGUCGUGGUAC---AGGGGGUG-GUauuu -5'
28834 3' -55.1 NC_006146.1 + 20022 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 105414 0.73 0.615373
Target:  5'- --aAGuCACCAUGUCCgCCACUAUGGAa -3'
miRNA:   3'- gggUC-GUGGUACAGGgGGUGGUAUUU- -5'
28834 3' -55.1 NC_006146.1 + 34943 0.71 0.707739
Target:  5'- cCCCAGCACCccggggugacGUGgcaCCCCugCGUGc- -3'
miRNA:   3'- -GGGUCGUGG----------UACag-GGGGugGUAUuu -5'
28834 3' -55.1 NC_006146.1 + 23100 0.7 0.757187
Target:  5'- gCCCGGUguGCCAgcGUCCCCCGCa----- -3'
miRNA:   3'- -GGGUCG--UGGUa-CAGGGGGUGguauuu -5'
28834 3' -55.1 NC_006146.1 + 117251 0.7 0.762955
Target:  5'- gCCGGgGCCAggggggucggcagGUUCCCCACCAUc-- -3'
miRNA:   3'- gGGUCgUGGUa------------CAGGGGGUGGUAuuu -5'
28834 3' -55.1 NC_006146.1 + 31509 0.72 0.634989
Target:  5'- cCCCGGCGCCGUGggggccuUCUCCUACUAa--- -3'
miRNA:   3'- -GGGUCGUGGUAC-------AGGGGGUGGUauuu -5'
28834 3' -55.1 NC_006146.1 + 113286 0.72 0.677211
Target:  5'- uCCUguAGCACCuUGgCCCCCACCGg--- -3'
miRNA:   3'- -GGG--UCGUGGuACaGGGGGUGGUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.