Results 1 - 20 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28834 | 3' | -55.1 | NC_006146.1 | + | 34602 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35345 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35252 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35159 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35066 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34973 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34881 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34788 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 34695 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35438 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35531 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35624 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 120045 | 0.66 | 0.937739 |
Target: 5'- gCCAaCGCCucucaUCCCCCACCAg--- -3' miRNA: 3'- gGGUcGUGGuac--AGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 126547 | 0.66 | 0.932766 |
Target: 5'- gUCUGGCACCucGUCCCCaucaGCCAc--- -3' miRNA: 3'- -GGGUCGUGGuaCAGGGGg---UGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 25653 | 0.66 | 0.927549 |
Target: 5'- -aCGGCGCUggucGUGUCccaCCCCACCAa--- -3' miRNA: 3'- ggGUCGUGG----UACAG---GGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 3120 | 0.66 | 0.927549 |
Target: 5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3' miRNA: 3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 2188 | 0.66 | 0.927549 |
Target: 5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3' miRNA: 3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 1256 | 0.66 | 0.927549 |
Target: 5'- gCCCAGCugUcauUCuCCCCGCCAa--- -3' miRNA: 3'- -GGGUCGugGuacAG-GGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 114050 | 0.66 | 0.927014 |
Target: 5'- cCCCAGCcaaagcuGCCg---CCCCCGCCGc--- -3' miRNA: 3'- -GGGUCG-------UGGuacaGGGGGUGGUauuu -5' |
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28834 | 3' | -55.1 | NC_006146.1 | + | 35717 | 0.66 | 0.922089 |
Target: 5'- aCCCaggGGCACCcgGcCCCCgGCCccGAGc -3' miRNA: 3'- -GGG---UCGUGGuaCaGGGGgUGGuaUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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