miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28834 5' -59.6 NC_006146.1 + 61862 0.66 0.798366
Target:  5'- -uCCCGGGGCagagguuccaCGGGGGCGCGCccucGGGu -3'
miRNA:   3'- acGGGUCCCG----------GUCCUUGUGCGac--UCC- -5'
28834 5' -59.6 NC_006146.1 + 68376 0.66 0.798366
Target:  5'- gGCaaCCAGGGCCuuGAugACGacgGGGGu -3'
miRNA:   3'- aCG--GGUCCCGGucCUugUGCga-CUCC- -5'
28834 5' -59.6 NC_006146.1 + 169465 0.66 0.798366
Target:  5'- gGCCUccccugGGGGCCucGGGgGCGgaGGGGg -3'
miRNA:   3'- aCGGG------UCCCGGucCUUgUGCgaCUCC- -5'
28834 5' -59.6 NC_006146.1 + 168533 0.66 0.798366
Target:  5'- gGCCUccccugGGGGCCucGGGgGCGgaGGGGg -3'
miRNA:   3'- aCGGG------UCCCGGucCUUgUGCgaCUCC- -5'
28834 5' -59.6 NC_006146.1 + 164396 0.66 0.798366
Target:  5'- cGCCaAGGGUCAGGAGCAUcca-AGGa -3'
miRNA:   3'- aCGGgUCCCGGUCCUUGUGcgacUCC- -5'
28834 5' -59.6 NC_006146.1 + 170396 0.66 0.798366
Target:  5'- gGCCUccccugGGGGCCucGGGgGCGgaGGGGg -3'
miRNA:   3'- aCGGG------UCCCGGucCUUgUGCgaCUCC- -5'
28834 5' -59.6 NC_006146.1 + 167601 0.66 0.798366
Target:  5'- gGCCUccccugGGGGCCucGGGgGCGgaGGGGg -3'
miRNA:   3'- aCGGG------UCCCGGucCUUgUGCgaCUCC- -5'
28834 5' -59.6 NC_006146.1 + 62996 0.66 0.798366
Target:  5'- gGCCCuGGGCUccGGGAGuCugGC--GGGu -3'
miRNA:   3'- aCGGGuCCCGG--UCCUU-GugCGacUCC- -5'
28834 5' -59.6 NC_006146.1 + 382 0.66 0.798366
Target:  5'- cGCCCccucAGGccccGCCcGccGCGCGCUGGGGg -3'
miRNA:   3'- aCGGG----UCC----CGGuCcuUGUGCGACUCC- -5'
28834 5' -59.6 NC_006146.1 + 167756 0.66 0.798366
Target:  5'- gGCgCAGGgGCCGGGugGGCGCGCaUGGc- -3'
miRNA:   3'- aCGgGUCC-CGGUCC--UUGUGCG-ACUcc -5'
28834 5' -59.6 NC_006146.1 + 86478 0.66 0.798366
Target:  5'- aGCCU-GGGCUuugAGGGGCA-GCUGGGc -3'
miRNA:   3'- aCGGGuCCCGG---UCCUUGUgCGACUCc -5'
28834 5' -59.6 NC_006146.1 + 96096 0.66 0.795741
Target:  5'- aGCCUgcGGGagcgcugcgucuGCCGGGAACugGgacacgaaaggaccCUGAGGa -3'
miRNA:   3'- aCGGG--UCC------------CGGUCCUUGugC--------------GACUCC- -5'
28834 5' -59.6 NC_006146.1 + 124920 0.66 0.793103
Target:  5'- gGCCUacacgcGGGGCgAGGAGCugccccgggcagagaGCGUcGAGGu -3'
miRNA:   3'- aCGGG------UCCCGgUCCUUG---------------UGCGaCUCC- -5'
28834 5' -59.6 NC_006146.1 + 85558 0.66 0.789566
Target:  5'- gGUCaCAcGGUCGGGGGCACG-UGGGGu -3'
miRNA:   3'- aCGG-GUcCCGGUCCUUGUGCgACUCC- -5'
28834 5' -59.6 NC_006146.1 + 115506 0.66 0.789566
Target:  5'- cGUCCuGGGGuCCcGGAGCagcgugccauuGCGCUGAGc -3'
miRNA:   3'- aCGGG-UCCC-GGuCCUUG-----------UGCGACUCc -5'
28834 5' -59.6 NC_006146.1 + 118641 0.66 0.789566
Target:  5'- cGCCCGGGGCCcAGu-ACACGUg---- -3'
miRNA:   3'- aCGGGUCCCGG-UCcuUGUGCGacucc -5'
28834 5' -59.6 NC_006146.1 + 68960 0.66 0.789566
Target:  5'- aGCCaGGGGgCAGGGcagaGC-CGCUGAuaGGg -3'
miRNA:   3'- aCGGgUCCCgGUCCU----UGuGCGACU--CC- -5'
28834 5' -59.6 NC_006146.1 + 41237 0.66 0.788679
Target:  5'- gUGgCCAGGcgaaagcgcucucGCCAuucccgggcGGAGCACGCgcccgcgGAGGa -3'
miRNA:   3'- -ACgGGUCC-------------CGGU---------CCUUGUGCGa------CUCC- -5'
28834 5' -59.6 NC_006146.1 + 65195 0.66 0.780633
Target:  5'- aGCCCuaggcgcucugGGGGCCcuGGGAGCccggGCGUccaGAGGu -3'
miRNA:   3'- aCGGG-----------UCCCGG--UCCUUG----UGCGa--CUCC- -5'
28834 5' -59.6 NC_006146.1 + 100754 0.66 0.780633
Target:  5'- cGCCCc-GGCCAGGAGcCAgGCgaAGGc -3'
miRNA:   3'- aCGGGucCCGGUCCUU-GUgCGacUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.