miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 9668 0.66 0.989904
Target:  5'- uGCCGUcgugggagaUGuUgGCCGUGgucAGGAUGAGGa -3'
miRNA:   3'- -CGGCA---------AC-GgUGGCGCau-UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 71213 0.66 0.986578
Target:  5'- -gCGggGCCGuaGCGUgcuagaauugguggGAGGugGAGGg -3'
miRNA:   3'- cgGCaaCGGUggCGCA--------------UUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 52962 0.66 0.985415
Target:  5'- aCCGUUcaugGCCcuCCGCG---GGGCGGGGc -3'
miRNA:   3'- cGGCAA----CGGu-GGCGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 131096 0.66 0.988548
Target:  5'- gGCCGUcaacgGCCGCCGUcccaGAAGcCGGGa -3'
miRNA:   3'- -CGGCAa----CGGUGGCGca--UUUCuGCUCc -5'
28835 3' -52.8 NC_006146.1 + 99601 0.66 0.983622
Target:  5'- gGCCGcggUGCU-CUGCGUAGc-ACGAGGc -3'
miRNA:   3'- -CGGCa--ACGGuGGCGCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 157521 0.66 0.989106
Target:  5'- uCCGUgGCCGCgcagaccacggugguCGCGgugAGGGAgGAGGu -3'
miRNA:   3'- cGGCAaCGGUG---------------GCGCa--UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 66301 0.66 0.987054
Target:  5'- aGUCGcgGCCAUCGUc-GGAGACGuGGu -3'
miRNA:   3'- -CGGCaaCGGUGGCGcaUUUCUGCuCC- -5'
28835 3' -52.8 NC_006146.1 + 120123 0.66 0.983622
Target:  5'- cCCGUgUGCCcacaccACCGaggagaGcGAGGACGAGGa -3'
miRNA:   3'- cGGCA-ACGG------UGGCg-----CaUUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 120812 0.66 0.985415
Target:  5'- gGCCGgacaagcgggGCCGCCGUGgac-GAaGAGGa -3'
miRNA:   3'- -CGGCaa--------CGGUGGCGCauuuCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 207 0.66 0.985415
Target:  5'- cGCCGgUGCCcCCGCGac-GGucccCGGGGc -3'
miRNA:   3'- -CGGCaACGGuGGCGCauuUCu---GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 39891 0.66 0.987054
Target:  5'- gGCUGagcgGCCugCGgGgcgggAAAcGACGAGGa -3'
miRNA:   3'- -CGGCaa--CGGugGCgCa----UUU-CUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 39818 0.66 0.988548
Target:  5'- gGCCGUUgacggcccggcgGCCucgGCCGCacaGUGGGccGGCGGGGg -3'
miRNA:   3'- -CGGCAA------------CGG---UGGCG---CAUUU--CUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 13081 0.66 0.987364
Target:  5'- uCCGggGCCAgCGCGgaggaguacucgGAccuggcccuguuuguGGACGGGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCa-----------UU---------------UCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 14832 0.66 0.987054
Target:  5'- gGCaCGgucucggGCCcgggGCCGCGgGAGGcCGAGGg -3'
miRNA:   3'- -CG-GCaa-----CGG----UGGCGCaUUUCuGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 53738 0.67 0.97475
Target:  5'- aGCCGcgGCUgcGCCGgGgcGAAGACGGGcGg -3'
miRNA:   3'- -CGGCaaCGG--UGGCgCa-UUUCUGCUC-C- -5'
28835 3' -52.8 NC_006146.1 + 150092 0.67 0.972069
Target:  5'- gGCCGUUgGCCACCccaGUGAAGcCGuAGa -3'
miRNA:   3'- -CGGCAA-CGGUGGcg-CAUUUCuGC-UCc -5'
28835 3' -52.8 NC_006146.1 + 105206 0.67 0.97475
Target:  5'- aGCCGggggUGCC-CgGUGccuGAGACGAGu -3'
miRNA:   3'- -CGGCa---ACGGuGgCGCau-UUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 42369 0.67 0.97475
Target:  5'- cCCGc-GCCGCCaGgGU--GGGCGAGGg -3'
miRNA:   3'- cGGCaaCGGUGG-CgCAuuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 122631 0.67 0.977238
Target:  5'- gGCCGggGCCcucuuUCGCGccAGGACGGcGGc -3'
miRNA:   3'- -CGGCaaCGGu----GGCGCauUUCUGCU-CC- -5'
28835 3' -52.8 NC_006146.1 + 120496 0.67 0.977238
Target:  5'- uGCCGUcccuggcgGCCgaggacgcgaGCCGCGUGGAugcGGCGGcGGg -3'
miRNA:   3'- -CGGCAa-------CGG----------UGGCGCAUUU---CUGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.