Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28835 | 3' | -52.8 | NC_006146.1 | + | 123352 | 0.67 | 0.977238 |
Target: 5'- aCgGUUGUagGCCGCGagGAGGAcCGAGGc -3' miRNA: 3'- cGgCAACGg-UGGCGCa-UUUCU-GCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 113958 | 0.67 | 0.979541 |
Target: 5'- --aGUaUGCUGCCGUGgccAGGCGGGGa -3' miRNA: 3'- cggCA-ACGGUGGCGCauuUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 130111 | 0.67 | 0.981047 |
Target: 5'- cGCCG--GCUuucucagaaACCGCGUGGAGACccucaggcgggacaGGGGa -3' miRNA: 3'- -CGGCaaCGG---------UGGCGCAUUUCUG--------------CUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 56322 | 0.67 | 0.979541 |
Target: 5'- gGCCGUaGCUgcGCCGCGaGAAG--GAGGc -3' miRNA: 3'- -CGGCAaCGG--UGGCGCaUUUCugCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 34152 | 0.67 | 0.97475 |
Target: 5'- cCCGgaGCC-CCgGCG-AGGGugGGGGg -3' miRNA: 3'- cGGCaaCGGuGG-CGCaUUUCugCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 50980 | 0.67 | 0.979319 |
Target: 5'- cGCCGcUGCCaacacugACCGCaaGAGGGCGccacGGGg -3' miRNA: 3'- -CGGCaACGG-------UGGCGcaUUUCUGC----UCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 126169 | 0.67 | 0.979319 |
Target: 5'- aGCCGcccgcgGCCACCGCaucAGGccggccaGCGGGGg -3' miRNA: 3'- -CGGCaa----CGGUGGCGcauUUC-------UGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 116298 | 0.67 | 0.978642 |
Target: 5'- gGCCGgauggcGCCcCCGCGguccucuccccaaGAGGAgGAGGg -3' miRNA: 3'- -CGGCaa----CGGuGGCGCa------------UUUCUgCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 120496 | 0.67 | 0.977238 |
Target: 5'- uGCCGUcccuggcgGCCgaggacgcgaGCCGCGUGGAugcGGCGGcGGg -3' miRNA: 3'- -CGGCAa-------CGG----------UGGCGCAUUU---CUGCU-CC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 122631 | 0.67 | 0.977238 |
Target: 5'- gGCCGggGCCcucuuUCGCGccAGGACGGcGGc -3' miRNA: 3'- -CGGCaaCGGu----GGCGCauUUCUGCU-CC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 42369 | 0.67 | 0.97475 |
Target: 5'- cCCGc-GCCGCCaGgGU--GGGCGAGGg -3' miRNA: 3'- cGGCaaCGGUGG-CgCAuuUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 105206 | 0.67 | 0.97475 |
Target: 5'- aGCCGggggUGCC-CgGUGccuGAGACGAGu -3' miRNA: 3'- -CGGCa---ACGGuGgCGCau-UUCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 14345 | 0.67 | 0.972069 |
Target: 5'- gGCCGUUGCgGCCcuGCugGUGGGGuCGGGu -3' miRNA: 3'- -CGGCAACGgUGG--CG--CAUUUCuGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 43487 | 0.67 | 0.981667 |
Target: 5'- gGCCGUUGaCACCGgcucCGgc--GGCGGGGc -3' miRNA: 3'- -CGGCAACgGUGGC----GCauuuCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 69327 | 0.68 | 0.967363 |
Target: 5'- cGUCGUUGgcuccaacuccagcuCCACCGUcucGGAGAUGGGGa -3' miRNA: 3'- -CGGCAAC---------------GGUGGCGca-UUUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 60620 | 0.68 | 0.966104 |
Target: 5'- cGCCGagGCCAUCaUGgc-AGACGGGGc -3' miRNA: 3'- -CGGCaaCGGUGGcGCauuUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 150724 | 0.68 | 0.962807 |
Target: 5'- cCCGgggGCCcuCUGCaaAGAGGCGAGGg -3' miRNA: 3'- cGGCaa-CGGu-GGCGcaUUUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 128804 | 0.68 | 0.962807 |
Target: 5'- aGUCGUgcGCCGuCCGCG-AAGGACGGcgcGGu -3' miRNA: 3'- -CGGCAa-CGGU-GGCGCaUUUCUGCU---CC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 108210 | 0.68 | 0.961775 |
Target: 5'- gGCUGUaGUgGCCGUGUAAAccuucaucugguucGugGAGGc -3' miRNA: 3'- -CGGCAaCGgUGGCGCAUUU--------------CugCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 47364 | 0.68 | 0.959292 |
Target: 5'- -aCGggGCCACCGUcaAGGGcAUGAGGu -3' miRNA: 3'- cgGCaaCGGUGGCGcaUUUC-UGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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