Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28835 | 3' | -52.8 | NC_006146.1 | + | 69284 | 1.13 | 0.004148 |
Target: 5'- gGCCGUUGCCACCGCGUAAAGACGAGGa -3' miRNA: 3'- -CGGCAACGGUGGCGCAUUUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 117882 | 0.77 | 0.599824 |
Target: 5'- gGCCGcgGCCAgCCGCGUGAGGcCcAGGg -3' miRNA: 3'- -CGGCaaCGGU-GGCGCAUUUCuGcUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 15483 | 0.76 | 0.610027 |
Target: 5'- cGCUG-UGCCugCGCGUGugggGGGACGuGGu -3' miRNA: 3'- -CGGCaACGGugGCGCAU----UUCUGCuCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 129446 | 0.76 | 0.649908 |
Target: 5'- cGCCGcUGCCACCGCcgcaaugGUGcAAGcuaGCGAGGa -3' miRNA: 3'- -CGGCaACGGUGGCG-------CAU-UUC---UGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 53517 | 0.76 | 0.630476 |
Target: 5'- gGCUGcggGCCGCgCGUGUGAAGgccGCGAGGa -3' miRNA: 3'- -CGGCaa-CGGUG-GCGCAUUUC---UGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 64419 | 0.76 | 0.646841 |
Target: 5'- gGCCGggGCCACgGCGgcguacgcugccaGGAGACaGAGGg -3' miRNA: 3'- -CGGCaaCGGUGgCGCa------------UUUCUG-CUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 2617 | 0.75 | 0.678434 |
Target: 5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3' miRNA: 3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 1685 | 0.75 | 0.678434 |
Target: 5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3' miRNA: 3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 754 | 0.75 | 0.678434 |
Target: 5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3' miRNA: 3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 3549 | 0.75 | 0.678434 |
Target: 5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3' miRNA: 3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 167417 | 0.73 | 0.797555 |
Target: 5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3' miRNA: 3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 53035 | 0.73 | 0.797555 |
Target: 5'- gGCCGcgGCCGCCGCcgagagGUAAgggGGGCGGGu -3' miRNA: 3'- -CGGCaaCGGUGGCG------CAUU---UCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 169281 | 0.73 | 0.797555 |
Target: 5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3' miRNA: 3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 168349 | 0.73 | 0.797555 |
Target: 5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3' miRNA: 3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 124125 | 0.73 | 0.788489 |
Target: 5'- cGCCGgccgGCCAgccauccgcCCGgGgucgGGAGGCGAGGa -3' miRNA: 3'- -CGGCaa--CGGU---------GGCgCa---UUUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 127863 | 0.73 | 0.806472 |
Target: 5'- aGCCGgcgUGCCauACCGCGcgugaUAGAGACGGc- -3' miRNA: 3'- -CGGCa--ACGG--UGGCGC-----AUUUCUGCUcc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 170212 | 0.73 | 0.797555 |
Target: 5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3' miRNA: 3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 33136 | 0.72 | 0.823824 |
Target: 5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3' miRNA: 3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 117564 | 0.72 | 0.815231 |
Target: 5'- gGCUGUUcaggguauggGCCGgCGUGUGGAGuCGGGGg -3' miRNA: 3'- -CGGCAA----------CGGUgGCGCAUUUCuGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 46405 | 0.72 | 0.815231 |
Target: 5'- gGCCGagaccagGCCGagucCCGCGUAGA-ACGAGGg -3' miRNA: 3'- -CGGCaa-----CGGU----GGCGCAUUUcUGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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