Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28835 | 3' | -52.8 | NC_006146.1 | + | 33136 | 0.72 | 0.823824 |
Target: 5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3' miRNA: 3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 33382 | 0.72 | 0.823824 |
Target: 5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3' miRNA: 3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 45815 | 0.72 | 0.832242 |
Target: 5'- cGCCGccacgGCCGCCuCGaagacGGAGACGGGGa -3' miRNA: 3'- -CGGCaa---CGGUGGcGCa----UUUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 129856 | 0.72 | 0.840479 |
Target: 5'- gGCCcccaggGCCGCCGCG----GACGGGGg -3' miRNA: 3'- -CGGcaa---CGGUGGCGCauuuCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 146794 | 0.71 | 0.856378 |
Target: 5'- cCCGgUGCCAgccgcccucgacCCGCGUcccAGGCGAGGc -3' miRNA: 3'- cGGCaACGGU------------GGCGCAuu-UCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 117172 | 0.71 | 0.856378 |
Target: 5'- cCCGgcGCaGCCGCGgcucccggaGAGGACGGGGa -3' miRNA: 3'- cGGCaaCGgUGGCGCa--------UUUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 94945 | 0.71 | 0.864026 |
Target: 5'- -aCGUgGCCGCUGCGgu-AGAgGGGGg -3' miRNA: 3'- cgGCAaCGGUGGCGCauuUCUgCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 89319 | 0.71 | 0.876547 |
Target: 5'- cCCGUUGCCccuguagcaucguuGCUGgGUGAcuACGAGGa -3' miRNA: 3'- cGGCAACGG--------------UGGCgCAUUucUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 167272 | 0.71 | 0.878692 |
Target: 5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3' miRNA: 3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 43000 | 0.71 | 0.878692 |
Target: 5'- ---aUUGCCGCCGgGUGAgaGGuGCGAGGg -3' miRNA: 3'- cggcAACGGUGGCgCAUU--UC-UGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 55362 | 0.71 | 0.878692 |
Target: 5'- aGCCcccGCCACCGCGcgcGGGACGcccGGGg -3' miRNA: 3'- -CGGcaaCGGUGGCGCau-UUCUGC---UCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 170068 | 0.71 | 0.878692 |
Target: 5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3' miRNA: 3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 169136 | 0.71 | 0.878692 |
Target: 5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3' miRNA: 3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 168204 | 0.71 | 0.878692 |
Target: 5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3' miRNA: 3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 41570 | 0.71 | 0.878692 |
Target: 5'- gGCCGcuccGCgCGCUGCGcGAGGACGAGc -3' miRNA: 3'- -CGGCaa--CG-GUGGCGCaUUUCUGCUCc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 154650 | 0.71 | 0.885007 |
Target: 5'- gGCgCGcUGCCGCCGgcugcacCGUGGuGGCGGGGg -3' miRNA: 3'- -CG-GCaACGGUGGC-------GCAUUuCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 168892 | 0.7 | 0.896439 |
Target: 5'- aUCGUUGCCGCCccgcagcGCGacUGucagcagguucucgGAGACGAGGg -3' miRNA: 3'- cGGCAACGGUGG-------CGC--AU--------------UUCUGCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 48551 | 0.7 | 0.897091 |
Target: 5'- cGCCGUUGCCGCCuCGaccuuGGAaucauccggggccuCGGGGg -3' miRNA: 3'- -CGGCAACGGUGGcGCauu--UCU--------------GCUCC- -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 39432 | 0.7 | 0.899033 |
Target: 5'- gGCCGggGCCugGCC-CGUGAGGAUGGa- -3' miRNA: 3'- -CGGCaaCGG--UGGcGCAUUUCUGCUcc -5' |
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28835 | 3' | -52.8 | NC_006146.1 | + | 20582 | 0.7 | 0.905355 |
Target: 5'- aGCCG--GCCugCGCcc--GGGCGAGGa -3' miRNA: 3'- -CGGCaaCGGugGCGcauuUCUGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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