miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 50980 0.67 0.979319
Target:  5'- cGCCGcUGCCaacacugACCGCaaGAGGGCGccacGGGg -3'
miRNA:   3'- -CGGCaACGG-------UGGCGcaUUUCUGC----UCC- -5'
28835 3' -52.8 NC_006146.1 + 116298 0.67 0.978642
Target:  5'- gGCCGgauggcGCCcCCGCGguccucuccccaaGAGGAgGAGGg -3'
miRNA:   3'- -CGGCaa----CGGuGGCGCa------------UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 164382 0.67 0.977238
Target:  5'- aCUGUUGCCGCCGCcgccAAGGGucAGGa -3'
miRNA:   3'- cGGCAACGGUGGCGca--UUUCUgcUCC- -5'
28835 3' -52.8 NC_006146.1 + 126236 0.67 0.977238
Target:  5'- cCCGgaGUCACUGCc---GGGCGAGGu -3'
miRNA:   3'- cGGCaaCGGUGGCGcauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 123352 0.67 0.977238
Target:  5'- aCgGUUGUagGCCGCGagGAGGAcCGAGGc -3'
miRNA:   3'- cGgCAACGg-UGGCGCa-UUUCU-GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 122631 0.67 0.977238
Target:  5'- gGCCGggGCCcucuuUCGCGccAGGACGGcGGc -3'
miRNA:   3'- -CGGCaaCGGu----GGCGCauUUCUGCU-CC- -5'
28835 3' -52.8 NC_006146.1 + 120496 0.67 0.977238
Target:  5'- uGCCGUcccuggcgGCCgaggacgcgaGCCGCGUGGAugcGGCGGcGGg -3'
miRNA:   3'- -CGGCAa-------CGG----------UGGCGCAUUU---CUGCU-CC- -5'
28835 3' -52.8 NC_006146.1 + 34152 0.67 0.97475
Target:  5'- cCCGgaGCC-CCgGCG-AGGGugGGGGg -3'
miRNA:   3'- cGGCaaCGGuGG-CGCaUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 53738 0.67 0.97475
Target:  5'- aGCCGcgGCUgcGCCGgGgcGAAGACGGGcGg -3'
miRNA:   3'- -CGGCaaCGG--UGGCgCa-UUUCUGCUC-C- -5'
28835 3' -52.8 NC_006146.1 + 42369 0.67 0.97475
Target:  5'- cCCGc-GCCGCCaGgGU--GGGCGAGGg -3'
miRNA:   3'- cGGCaaCGGUGG-CgCAuuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 105206 0.67 0.97475
Target:  5'- aGCCGggggUGCC-CgGUGccuGAGACGAGu -3'
miRNA:   3'- -CGGCa---ACGGuGgCGCau-UUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 114110 0.67 0.972069
Target:  5'- cGCCagacgGCCGCCGCGcucaccGAgGAGGc -3'
miRNA:   3'- -CGGcaa--CGGUGGCGCauuu--CUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 150092 0.67 0.972069
Target:  5'- gGCCGUUgGCCACCccaGUGAAGcCGuAGa -3'
miRNA:   3'- -CGGCAA-CGGUGGcg-CAUUUCuGC-UCc -5'
28835 3' -52.8 NC_006146.1 + 14345 0.67 0.972069
Target:  5'- gGCCGUUGCgGCCcuGCugGUGGGGuCGGGu -3'
miRNA:   3'- -CGGCAACGgUGG--CG--CAUUUCuGCUCc -5'
28835 3' -52.8 NC_006146.1 + 69327 0.68 0.967363
Target:  5'- cGUCGUUGgcuccaacuccagcuCCACCGUcucGGAGAUGGGGa -3'
miRNA:   3'- -CGGCAAC---------------GGUGGCGca-UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 60620 0.68 0.966104
Target:  5'- cGCCGagGCCAUCaUGgc-AGACGGGGc -3'
miRNA:   3'- -CGGCaaCGGUGGcGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 101848 0.68 0.966104
Target:  5'- cGCuCGggcUGCCGCaccacggGUGgcGGGGCGAGGa -3'
miRNA:   3'- -CG-GCa--ACGGUGg------CGCauUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 150724 0.68 0.962807
Target:  5'- cCCGgggGCCcuCUGCaaAGAGGCGAGGg -3'
miRNA:   3'- cGGCaa-CGGu-GGCGcaUUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 123251 0.68 0.962807
Target:  5'- cGCCGcgcuggGCCggGCCGCGgccAGAGACGGc- -3'
miRNA:   3'- -CGGCaa----CGG--UGGCGCa--UUUCUGCUcc -5'
28835 3' -52.8 NC_006146.1 + 54470 0.68 0.962807
Target:  5'- gGCCGguuuucaGCCACCacuuuGCc-AGGGACGAGGa -3'
miRNA:   3'- -CGGCaa-----CGGUGG-----CGcaUUUCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.