miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 128804 0.68 0.962807
Target:  5'- aGUCGUgcGCCGuCCGCG-AAGGACGGcgcGGu -3'
miRNA:   3'- -CGGCAa-CGGU-GGCGCaUUUCUGCU---CC- -5'
28835 3' -52.8 NC_006146.1 + 108210 0.68 0.961775
Target:  5'- gGCUGUaGUgGCCGUGUAAAccuucaucugguucGugGAGGc -3'
miRNA:   3'- -CGGCAaCGgUGGCGCAUUU--------------CugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 84996 0.68 0.959292
Target:  5'- aGCUGggGuCCAUCGCG-AGAGGCaGAGa -3'
miRNA:   3'- -CGGCaaC-GGUGGCGCaUUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 57037 0.68 0.959292
Target:  5'- gGCCGgggcgaaGCCGCCaGgGUuGAGGCGGGa -3'
miRNA:   3'- -CGGCaa-----CGGUGG-CgCAuUUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 47364 0.68 0.959292
Target:  5'- -aCGggGCCACCGUcaAGGGcAUGAGGu -3'
miRNA:   3'- cgGCaaCGGUGGCGcaUUUC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 68905 0.68 0.959292
Target:  5'- --gGUgGCCACCGCGcucaaaauGGACGAGa -3'
miRNA:   3'- cggCAaCGGUGGCGCauu-----UCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 89785 0.68 0.955557
Target:  5'- --aGggGCCcaugGCCGUGgacGAGGACGAGGc -3'
miRNA:   3'- cggCaaCGG----UGGCGCa--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 24757 0.68 0.954392
Target:  5'- aGCCuccGCCGCCuGCGUcccgcugaaaaaccAGAGACGAGc -3'
miRNA:   3'- -CGGcaaCGGUGG-CGCA--------------UUUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 55458 0.68 0.951594
Target:  5'- aCCGUgGCCacccgcucgaugGCCGCGggcGAGaACGAGGc -3'
miRNA:   3'- cGGCAaCGG------------UGGCGCau-UUC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 150795 0.69 0.94021
Target:  5'- uGCCGg-GCCACCGUGUccagcuuguagucagAGAGGCuGAGc -3'
miRNA:   3'- -CGGCaaCGGUGGCGCA---------------UUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 160760 0.69 0.938317
Target:  5'- aGCUGgucucUGCCACUuuGuCGUccGGGGGCGAGGg -3'
miRNA:   3'- -CGGCa----ACGGUGG--C-GCA--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 56222 0.69 0.938317
Target:  5'- aGCCGcgaGCCGuccagcggguCCGCGggggcGGAGGCGGGGc -3'
miRNA:   3'- -CGGCaa-CGGU----------GGCGCa----UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 153500 0.69 0.93342
Target:  5'- gGCCGcUGCCgugcuucuggagGCUGUGgaUGGAGugGGGGg -3'
miRNA:   3'- -CGGCaACGG------------UGGCGC--AUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 149268 0.69 0.93342
Target:  5'- uGCCG-UGCCGcuCCGCGU--AGGCcGGGu -3'
miRNA:   3'- -CGGCaACGGU--GGCGCAuuUCUGcUCC- -5'
28835 3' -52.8 NC_006146.1 + 136610 0.69 0.928284
Target:  5'- gGCCGggGUCGCCaGCGUcguccAGACGcucGGGg -3'
miRNA:   3'- -CGGCaaCGGUGG-CGCAuu---UCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 32780 0.69 0.928284
Target:  5'- gGCCGggGUCGCCaGCGUcguccAGACGcucGGGg -3'
miRNA:   3'- -CGGCaaCGGUGG-CGCAuu---UCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 144654 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 147731 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 150809 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 153887 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.