miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 141576 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 153887 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 122818 0.7 0.917295
Target:  5'- cGCUGUcgGCCGCCGUGagcGAGuACGuGGa -3'
miRNA:   3'- -CGGCAa-CGGUGGCGCau-UUC-UGCuCC- -5'
28835 3' -52.8 NC_006146.1 + 164306 0.7 0.911443
Target:  5'- cGCCGggGCCACUGcCGUugcuguuGuCGGGGu -3'
miRNA:   3'- -CGGCaaCGGUGGC-GCAuuu----CuGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 4663 0.7 0.911443
Target:  5'- cGCCGU--CCuggGCCGgGUGggcGAGGCGGGGg -3'
miRNA:   3'- -CGGCAacGG---UGGCgCAU---UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 20582 0.7 0.905355
Target:  5'- aGCCG--GCCugCGCcc--GGGCGAGGa -3'
miRNA:   3'- -CGGCaaCGGugGCGcauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 39432 0.7 0.899033
Target:  5'- gGCCGggGCCugGCC-CGUGAGGAUGGa- -3'
miRNA:   3'- -CGGCaaCGG--UGGcGCAUUUCUGCUcc -5'
28835 3' -52.8 NC_006146.1 + 48551 0.7 0.897091
Target:  5'- cGCCGUUGCCGCCuCGaccuuGGAaucauccggggccuCGGGGg -3'
miRNA:   3'- -CGGCAACGGUGGcGCauu--UCU--------------GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 168892 0.7 0.896439
Target:  5'- aUCGUUGCCGCCccgcagcGCGacUGucagcagguucucgGAGACGAGGg -3'
miRNA:   3'- cGGCAACGGUGG-------CGC--AU--------------UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 154650 0.71 0.885007
Target:  5'- gGCgCGcUGCCGCCGgcugcacCGUGGuGGCGGGGg -3'
miRNA:   3'- -CG-GCaACGGUGGC-------GCAUUuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 170068 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 41570 0.71 0.878692
Target:  5'- gGCCGcuccGCgCGCUGCGcGAGGACGAGc -3'
miRNA:   3'- -CGGCaa--CG-GUGGCGCaUUUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 43000 0.71 0.878692
Target:  5'- ---aUUGCCGCCGgGUGAgaGGuGCGAGGg -3'
miRNA:   3'- cggcAACGGUGGCgCAUU--UC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 55362 0.71 0.878692
Target:  5'- aGCCcccGCCACCGCGcgcGGGACGcccGGGg -3'
miRNA:   3'- -CGGcaaCGGUGGCGCau-UUCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 167272 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 168204 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 169136 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 89319 0.71 0.876547
Target:  5'- cCCGUUGCCccuguagcaucguuGCUGgGUGAcuACGAGGa -3'
miRNA:   3'- cGGCAACGG--------------UGGCgCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 94945 0.71 0.864026
Target:  5'- -aCGUgGCCGCUGCGgu-AGAgGGGGg -3'
miRNA:   3'- cgGCAaCGGUGGCGCauuUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 117172 0.71 0.856378
Target:  5'- cCCGgcGCaGCCGCGgcucccggaGAGGACGGGGa -3'
miRNA:   3'- cGGCaaCGgUGGCGCa--------UUUCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.