miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 207 0.66 0.985415
Target:  5'- cGCCGgUGCCcCCGCGac-GGucccCGGGGc -3'
miRNA:   3'- -CGGCaACGGuGGCGCauuUCu---GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 754 0.75 0.678434
Target:  5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3'
miRNA:   3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 1685 0.75 0.678434
Target:  5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3'
miRNA:   3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 2617 0.75 0.678434
Target:  5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3'
miRNA:   3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 3549 0.75 0.678434
Target:  5'- gGCCGgcGCCGCCGCGcgugcagccgagcgUGAcGACGGGa -3'
miRNA:   3'- -CGGCaaCGGUGGCGC--------------AUUuCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 4663 0.7 0.911443
Target:  5'- cGCCGU--CCuggGCCGgGUGggcGAGGCGGGGg -3'
miRNA:   3'- -CGGCAacGG---UGGCgCAU---UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 9668 0.66 0.989904
Target:  5'- uGCCGUcgugggagaUGuUgGCCGUGgucAGGAUGAGGa -3'
miRNA:   3'- -CGGCA---------AC-GgUGGCGCau-UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 13081 0.66 0.987364
Target:  5'- uCCGggGCCAgCGCGgaggaguacucgGAccuggcccuguuuguGGACGGGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCa-----------UU---------------UCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 14345 0.67 0.972069
Target:  5'- gGCCGUUGCgGCCcuGCugGUGGGGuCGGGu -3'
miRNA:   3'- -CGGCAACGgUGG--CG--CAUUUCuGCUCc -5'
28835 3' -52.8 NC_006146.1 + 14832 0.66 0.987054
Target:  5'- gGCaCGgucucggGCCcgggGCCGCGgGAGGcCGAGGg -3'
miRNA:   3'- -CG-GCaa-----CGG----UGGCGCaUUUCuGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 15483 0.76 0.610027
Target:  5'- cGCUG-UGCCugCGCGUGugggGGGACGuGGu -3'
miRNA:   3'- -CGGCaACGGugGCGCAU----UUCUGCuCC- -5'
28835 3' -52.8 NC_006146.1 + 20582 0.7 0.905355
Target:  5'- aGCCG--GCCugCGCcc--GGGCGAGGa -3'
miRNA:   3'- -CGGCaaCGGugGCGcauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 24757 0.68 0.954392
Target:  5'- aGCCuccGCCGCCuGCGUcccgcugaaaaaccAGAGACGAGc -3'
miRNA:   3'- -CGGcaaCGGUGG-CGCA--------------UUUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 32780 0.69 0.928284
Target:  5'- gGCCGggGUCGCCaGCGUcguccAGACGcucGGGg -3'
miRNA:   3'- -CGGCaaCGGUGG-CGCAuu---UCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 33136 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 33260 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 33382 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 34152 0.67 0.97475
Target:  5'- cCCGgaGCC-CCgGCG-AGGGugGGGGg -3'
miRNA:   3'- cGGCaaCGGuGG-CGCaUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 39432 0.7 0.899033
Target:  5'- gGCCGggGCCugGCC-CGUGAGGAUGGa- -3'
miRNA:   3'- -CGGCaaCGG--UGGcGCAUUUCUGCUcc -5'
28835 3' -52.8 NC_006146.1 + 39818 0.66 0.988548
Target:  5'- gGCCGUUgacggcccggcgGCCucgGCCGCacaGUGGGccGGCGGGGg -3'
miRNA:   3'- -CGGCAA------------CGG---UGGCG---CAUUU--CUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.