miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 39891 0.66 0.987054
Target:  5'- gGCUGagcgGCCugCGgGgcgggAAAcGACGAGGa -3'
miRNA:   3'- -CGGCaa--CGGugGCgCa----UUU-CUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 41570 0.71 0.878692
Target:  5'- gGCCGcuccGCgCGCUGCGcGAGGACGAGc -3'
miRNA:   3'- -CGGCaa--CG-GUGGCGCaUUUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 42369 0.67 0.97475
Target:  5'- cCCGc-GCCGCCaGgGU--GGGCGAGGg -3'
miRNA:   3'- cGGCaaCGGUGG-CgCAuuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 43000 0.71 0.878692
Target:  5'- ---aUUGCCGCCGgGUGAgaGGuGCGAGGg -3'
miRNA:   3'- cggcAACGGUGGCgCAUU--UC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 43487 0.67 0.981667
Target:  5'- gGCCGUUGaCACCGgcucCGgc--GGCGGGGc -3'
miRNA:   3'- -CGGCAACgGUGGC----GCauuuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 45815 0.72 0.832242
Target:  5'- cGCCGccacgGCCGCCuCGaagacGGAGACGGGGa -3'
miRNA:   3'- -CGGCaa---CGGUGGcGCa----UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 46405 0.72 0.815231
Target:  5'- gGCCGagaccagGCCGagucCCGCGUAGA-ACGAGGg -3'
miRNA:   3'- -CGGCaa-----CGGU----GGCGCAUUUcUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 47364 0.68 0.959292
Target:  5'- -aCGggGCCACCGUcaAGGGcAUGAGGu -3'
miRNA:   3'- cgGCaaCGGUGGCGcaUUUC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 48551 0.7 0.897091
Target:  5'- cGCCGUUGCCGCCuCGaccuuGGAaucauccggggccuCGGGGg -3'
miRNA:   3'- -CGGCAACGGUGGcGCauu--UCU--------------GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 50980 0.67 0.979319
Target:  5'- cGCCGcUGCCaacacugACCGCaaGAGGGCGccacGGGg -3'
miRNA:   3'- -CGGCaACGG-------UGGCGcaUUUCUGC----UCC- -5'
28835 3' -52.8 NC_006146.1 + 52962 0.66 0.985415
Target:  5'- aCCGUUcaugGCCcuCCGCG---GGGCGGGGc -3'
miRNA:   3'- cGGCAA----CGGu-GGCGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 53035 0.73 0.797555
Target:  5'- gGCCGcgGCCGCCGCcgagagGUAAgggGGGCGGGu -3'
miRNA:   3'- -CGGCaaCGGUGGCG------CAUU---UCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 53517 0.76 0.630476
Target:  5'- gGCUGcggGCCGCgCGUGUGAAGgccGCGAGGa -3'
miRNA:   3'- -CGGCaa-CGGUG-GCGCAUUUC---UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 53738 0.67 0.97475
Target:  5'- aGCCGcgGCUgcGCCGgGgcGAAGACGGGcGg -3'
miRNA:   3'- -CGGCaaCGG--UGGCgCa-UUUCUGCUC-C- -5'
28835 3' -52.8 NC_006146.1 + 54470 0.68 0.962807
Target:  5'- gGCCGguuuucaGCCACCacuuuGCc-AGGGACGAGGa -3'
miRNA:   3'- -CGGCaa-----CGGUGG-----CGcaUUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 55362 0.71 0.878692
Target:  5'- aGCCcccGCCACCGCGcgcGGGACGcccGGGg -3'
miRNA:   3'- -CGGcaaCGGUGGCGCau-UUCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 55458 0.68 0.951594
Target:  5'- aCCGUgGCCacccgcucgaugGCCGCGggcGAGaACGAGGc -3'
miRNA:   3'- cGGCAaCGG------------UGGCGCau-UUC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 56222 0.69 0.938317
Target:  5'- aGCCGcgaGCCGuccagcggguCCGCGggggcGGAGGCGGGGc -3'
miRNA:   3'- -CGGCaa-CGGU----------GGCGCa----UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 56322 0.67 0.979541
Target:  5'- gGCCGUaGCUgcGCCGCGaGAAG--GAGGc -3'
miRNA:   3'- -CGGCAaCGG--UGGCGCaUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 57037 0.68 0.959292
Target:  5'- gGCCGgggcgaaGCCGCCaGgGUuGAGGCGGGa -3'
miRNA:   3'- -CGGCaa-----CGGUGG-CgCAuUUCUGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.