miRNA display CGI


Results 41 - 60 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 60620 0.68 0.966104
Target:  5'- cGCCGagGCCAUCaUGgc-AGACGGGGc -3'
miRNA:   3'- -CGGCaaCGGUGGcGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 64419 0.76 0.646841
Target:  5'- gGCCGggGCCACgGCGgcguacgcugccaGGAGACaGAGGg -3'
miRNA:   3'- -CGGCaaCGGUGgCGCa------------UUUCUG-CUCC- -5'
28835 3' -52.8 NC_006146.1 + 66301 0.66 0.987054
Target:  5'- aGUCGcgGCCAUCGUc-GGAGACGuGGu -3'
miRNA:   3'- -CGGCaaCGGUGGCGcaUUUCUGCuCC- -5'
28835 3' -52.8 NC_006146.1 + 68905 0.68 0.959292
Target:  5'- --gGUgGCCACCGCGcucaaaauGGACGAGa -3'
miRNA:   3'- cggCAaCGGUGGCGCauu-----UCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 69284 1.13 0.004148
Target:  5'- gGCCGUUGCCACCGCGUAAAGACGAGGa -3'
miRNA:   3'- -CGGCAACGGUGGCGCAUUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 69327 0.68 0.967363
Target:  5'- cGUCGUUGgcuccaacuccagcuCCACCGUcucGGAGAUGGGGa -3'
miRNA:   3'- -CGGCAAC---------------GGUGGCGca-UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 71213 0.66 0.986578
Target:  5'- -gCGggGCCGuaGCGUgcuagaauugguggGAGGugGAGGg -3'
miRNA:   3'- cgGCaaCGGUggCGCA--------------UUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 84996 0.68 0.959292
Target:  5'- aGCUGggGuCCAUCGCG-AGAGGCaGAGa -3'
miRNA:   3'- -CGGCaaC-GGUGGCGCaUUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 89319 0.71 0.876547
Target:  5'- cCCGUUGCCccuguagcaucguuGCUGgGUGAcuACGAGGa -3'
miRNA:   3'- cGGCAACGG--------------UGGCgCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 89785 0.68 0.955557
Target:  5'- --aGggGCCcaugGCCGUGgacGAGGACGAGGc -3'
miRNA:   3'- cggCaaCGG----UGGCGCa--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 94945 0.71 0.864026
Target:  5'- -aCGUgGCCGCUGCGgu-AGAgGGGGg -3'
miRNA:   3'- cgGCAaCGGUGGCGCauuUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 99521 0.67 0.981667
Target:  5'- cGCCcucgGCCACCaGCaGUcaGGAGACGAcGGu -3'
miRNA:   3'- -CGGcaa-CGGUGG-CG-CA--UUUCUGCU-CC- -5'
28835 3' -52.8 NC_006146.1 + 99601 0.66 0.983622
Target:  5'- gGCCGcggUGCU-CUGCGUAGc-ACGAGGc -3'
miRNA:   3'- -CGGCa--ACGGuGGCGCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 101848 0.68 0.966104
Target:  5'- cGCuCGggcUGCCGCaccacggGUGgcGGGGCGAGGa -3'
miRNA:   3'- -CG-GCa--ACGGUGg------CGCauUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 105206 0.67 0.97475
Target:  5'- aGCCGggggUGCC-CgGUGccuGAGACGAGu -3'
miRNA:   3'- -CGGCa---ACGGuGgCGCau-UUCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 108210 0.68 0.961775
Target:  5'- gGCUGUaGUgGCCGUGUAAAccuucaucugguucGugGAGGc -3'
miRNA:   3'- -CGGCAaCGgUGGCGCAUUU--------------CugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 113958 0.67 0.979541
Target:  5'- --aGUaUGCUGCCGUGgccAGGCGGGGa -3'
miRNA:   3'- cggCA-ACGGUGGCGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 114110 0.67 0.972069
Target:  5'- cGCCagacgGCCGCCGCGcucaccGAgGAGGc -3'
miRNA:   3'- -CGGcaa--CGGUGGCGCauuu--CUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 116298 0.67 0.978642
Target:  5'- gGCCGgauggcGCCcCCGCGguccucuccccaaGAGGAgGAGGg -3'
miRNA:   3'- -CGGCaa----CGGuGGCGCa------------UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 117172 0.71 0.856378
Target:  5'- cCCGgcGCaGCCGCGgcucccggaGAGGACGGGGa -3'
miRNA:   3'- cGGCaaCGgUGGCGCa--------UUUCUGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.