miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 170212 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 170068 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 169281 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 169136 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 168892 0.7 0.896439
Target:  5'- aUCGUUGCCGCCccgcagcGCGacUGucagcagguucucgGAGACGAGGg -3'
miRNA:   3'- cGGCAACGGUGG-------CGC--AU--------------UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 168349 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 168204 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 167417 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 167272 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 164382 0.67 0.977238
Target:  5'- aCUGUUGCCGCCGCcgccAAGGGucAGGa -3'
miRNA:   3'- cGGCAACGGUGGCGca--UUUCUgcUCC- -5'
28835 3' -52.8 NC_006146.1 + 164306 0.7 0.911443
Target:  5'- cGCCGggGCCACUGcCGUugcuguuGuCGGGGu -3'
miRNA:   3'- -CGGCaaCGGUGGC-GCAuuu----CuGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 160760 0.69 0.938317
Target:  5'- aGCUGgucucUGCCACUuuGuCGUccGGGGGCGAGGg -3'
miRNA:   3'- -CGGCa----ACGGUGG--C-GCA--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 157521 0.66 0.989106
Target:  5'- uCCGUgGCCGCgcagaccacggugguCGCGgugAGGGAgGAGGu -3'
miRNA:   3'- cGGCAaCGGUG---------------GCGCa--UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 156965 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 154650 0.71 0.885007
Target:  5'- gGCgCGcUGCCGCCGgcugcacCGUGGuGGCGGGGg -3'
miRNA:   3'- -CG-GCaACGGUGGC-------GCAUUuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 153887 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 153500 0.69 0.93342
Target:  5'- gGCCGcUGCCgugcuucuggagGCUGUGgaUGGAGugGGGGg -3'
miRNA:   3'- -CGGCaACGG------------UGGCGC--AUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 150809 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 150795 0.69 0.94021
Target:  5'- uGCCGg-GCCACCGUGUccagcuuguagucagAGAGGCuGAGc -3'
miRNA:   3'- -CGGCaaCGGUGGCGCA---------------UUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 150724 0.68 0.962807
Target:  5'- cCCGgggGCCcuCUGCaaAGAGGCGAGGg -3'
miRNA:   3'- cGGCaa-CGGu-GGCGcaUUUCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.