miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 150092 0.67 0.972069
Target:  5'- gGCCGUUgGCCACCccaGUGAAGcCGuAGa -3'
miRNA:   3'- -CGGCAA-CGGUGGcg-CAUUUCuGC-UCc -5'
28835 3' -52.8 NC_006146.1 + 149268 0.69 0.93342
Target:  5'- uGCCG-UGCCGcuCCGCGU--AGGCcGGGu -3'
miRNA:   3'- -CGGCaACGGU--GGCGCAuuUCUGcUCC- -5'
28835 3' -52.8 NC_006146.1 + 147731 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 146794 0.71 0.856378
Target:  5'- cCCGgUGCCAgccgcccucgacCCGCGUcccAGGCGAGGc -3'
miRNA:   3'- cGGCaACGGU------------GGCGCAuu-UCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 144654 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 141576 0.7 0.922909
Target:  5'- aGCCGggGCC-UCGgGgagggAGAGAgGAGGg -3'
miRNA:   3'- -CGGCaaCGGuGGCgCa----UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 136610 0.69 0.928284
Target:  5'- gGCCGggGUCGCCaGCGUcguccAGACGcucGGGg -3'
miRNA:   3'- -CGGCaaCGGUGG-CGCAuu---UCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 131096 0.66 0.988548
Target:  5'- gGCCGUcaacgGCCGCCGUcccaGAAGcCGGGa -3'
miRNA:   3'- -CGGCAa----CGGUGGCGca--UUUCuGCUCc -5'
28835 3' -52.8 NC_006146.1 + 130111 0.67 0.981047
Target:  5'- cGCCG--GCUuucucagaaACCGCGUGGAGACccucaggcgggacaGGGGa -3'
miRNA:   3'- -CGGCaaCGG---------UGGCGCAUUUCUG--------------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 129856 0.72 0.840479
Target:  5'- gGCCcccaggGCCGCCGCG----GACGGGGg -3'
miRNA:   3'- -CGGcaa---CGGUGGCGCauuuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 129446 0.76 0.649908
Target:  5'- cGCCGcUGCCACCGCcgcaaugGUGcAAGcuaGCGAGGa -3'
miRNA:   3'- -CGGCaACGGUGGCG-------CAU-UUC---UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 128804 0.68 0.962807
Target:  5'- aGUCGUgcGCCGuCCGCG-AAGGACGGcgcGGu -3'
miRNA:   3'- -CGGCAa-CGGU-GGCGCaUUUCUGCU---CC- -5'
28835 3' -52.8 NC_006146.1 + 127863 0.73 0.806472
Target:  5'- aGCCGgcgUGCCauACCGCGcgugaUAGAGACGGc- -3'
miRNA:   3'- -CGGCa--ACGG--UGGCGC-----AUUUCUGCUcc -5'
28835 3' -52.8 NC_006146.1 + 126236 0.67 0.977238
Target:  5'- cCCGgaGUCACUGCc---GGGCGAGGu -3'
miRNA:   3'- cGGCaaCGGUGGCGcauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 126169 0.67 0.979319
Target:  5'- aGCCGcccgcgGCCACCGCaucAGGccggccaGCGGGGg -3'
miRNA:   3'- -CGGCaa----CGGUGGCGcauUUC-------UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 124125 0.73 0.788489
Target:  5'- cGCCGgccgGCCAgccauccgcCCGgGgucgGGAGGCGAGGa -3'
miRNA:   3'- -CGGCaa--CGGU---------GGCgCa---UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 123352 0.67 0.977238
Target:  5'- aCgGUUGUagGCCGCGagGAGGAcCGAGGc -3'
miRNA:   3'- cGgCAACGg-UGGCGCa-UUUCU-GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 123251 0.68 0.962807
Target:  5'- cGCCGcgcuggGCCggGCCGCGgccAGAGACGGc- -3'
miRNA:   3'- -CGGCaa----CGG--UGGCGCa--UUUCUGCUcc -5'
28835 3' -52.8 NC_006146.1 + 122818 0.7 0.917295
Target:  5'- cGCUGUcgGCCGCCGUGagcGAGuACGuGGa -3'
miRNA:   3'- -CGGCAa-CGGUGGCGCau-UUC-UGCuCC- -5'
28835 3' -52.8 NC_006146.1 + 122631 0.67 0.977238
Target:  5'- gGCCGggGCCcucuuUCGCGccAGGACGGcGGc -3'
miRNA:   3'- -CGGCaaCGGu----GGCGCauUUCUGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.