miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 53517 0.76 0.630476
Target:  5'- gGCUGcggGCCGCgCGUGUGAAGgccGCGAGGa -3'
miRNA:   3'- -CGGCaa-CGGUG-GCGCAUUUC---UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 89319 0.71 0.876547
Target:  5'- cCCGUUGCCccuguagcaucguuGCUGgGUGAcuACGAGGa -3'
miRNA:   3'- cGGCAACGG--------------UGGCgCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 55362 0.71 0.878692
Target:  5'- aGCCcccGCCACCGCGcgcGGGACGcccGGGg -3'
miRNA:   3'- -CGGcaaCGGUGGCGCau-UUCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 157521 0.66 0.989106
Target:  5'- uCCGUgGCCGCgcagaccacggugguCGCGgugAGGGAgGAGGu -3'
miRNA:   3'- cGGCAaCGGUG---------------GCGCa--UUUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 167417 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 168349 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 170212 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 117564 0.72 0.815231
Target:  5'- gGCUGUUcaggguauggGCCGgCGUGUGGAGuCGGGGg -3'
miRNA:   3'- -CGGCAA----------CGGUgGCGCAUUUCuGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 33260 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 94945 0.71 0.864026
Target:  5'- -aCGUgGCCGCUGCGgu-AGAgGGGGg -3'
miRNA:   3'- cgGCAaCGGUGGCGCauuUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 45815 0.72 0.832242
Target:  5'- cGCCGccacgGCCGCCuCGaagacGGAGACGGGGa -3'
miRNA:   3'- -CGGCaa---CGGUGGcGCa----UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 33136 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 64419 0.76 0.646841
Target:  5'- gGCCGggGCCACgGCGgcguacgcugccaGGAGACaGAGGg -3'
miRNA:   3'- -CGGCaaCGGUGgCGCa------------UUUCUG-CUCC- -5'
28835 3' -52.8 NC_006146.1 + 129856 0.72 0.840479
Target:  5'- gGCCcccaggGCCGCCGCG----GACGGGGg -3'
miRNA:   3'- -CGGcaa---CGGUGGCGCauuuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 129446 0.76 0.649908
Target:  5'- cGCCGcUGCCACCGCcgcaaugGUGcAAGcuaGCGAGGa -3'
miRNA:   3'- -CGGCaACGGUGGCG-------CAU-UUC---UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 46405 0.72 0.815231
Target:  5'- gGCCGagaccagGCCGagucCCGCGUAGA-ACGAGGg -3'
miRNA:   3'- -CGGCaa-----CGGU----GGCGCAUUUcUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 146794 0.71 0.856378
Target:  5'- cCCGgUGCCAgccgcccucgacCCGCGUcccAGGCGAGGc -3'
miRNA:   3'- cGGCaACGGU------------GGCGCAuu-UCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 43000 0.71 0.878692
Target:  5'- ---aUUGCCGCCGgGUGAgaGGuGCGAGGg -3'
miRNA:   3'- cggcAACGGUGGCgCAUU--UC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 53035 0.73 0.797555
Target:  5'- gGCCGcgGCCGCCGCcgagagGUAAgggGGGCGGGu -3'
miRNA:   3'- -CGGCaaCGGUGGCG------CAUU---UCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 169281 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.