miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 169136 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 55362 0.71 0.878692
Target:  5'- aGCCcccGCCACCGCGcgcGGGACGcccGGGg -3'
miRNA:   3'- -CGGcaaCGGUGGCGCau-UUCUGC---UCC- -5'
28835 3' -52.8 NC_006146.1 + 33136 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 53035 0.73 0.797555
Target:  5'- gGCCGcgGCCGCCGCcgagagGUAAgggGGGCGGGu -3'
miRNA:   3'- -CGGCaaCGGUGGCG------CAUU---UCUGCUCc -5'
28835 3' -52.8 NC_006146.1 + 55458 0.68 0.951594
Target:  5'- aCCGUgGCCacccgcucgaugGCCGCGggcGAGaACGAGGc -3'
miRNA:   3'- cGGCAaCGG------------UGGCGCau-UUC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 4663 0.7 0.911443
Target:  5'- cGCCGU--CCuggGCCGgGUGggcGAGGCGGGGg -3'
miRNA:   3'- -CGGCAacGG---UGGCgCAU---UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 89319 0.71 0.876547
Target:  5'- cCCGUUGCCccuguagcaucguuGCUGgGUGAcuACGAGGa -3'
miRNA:   3'- cGGCAACGG--------------UGGCgCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 129446 0.76 0.649908
Target:  5'- cGCCGcUGCCACCGCcgcaaugGUGcAAGcuaGCGAGGa -3'
miRNA:   3'- -CGGCaACGGUGGCG-------CAU-UUC---UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 39432 0.7 0.899033
Target:  5'- gGCCGggGCCugGCC-CGUGAGGAUGGa- -3'
miRNA:   3'- -CGGCaaCGG--UGGcGCAUUUCUGCUcc -5'
28835 3' -52.8 NC_006146.1 + 64419 0.76 0.646841
Target:  5'- gGCCGggGCCACgGCGgcguacgcugccaGGAGACaGAGGg -3'
miRNA:   3'- -CGGCaaCGGUGgCGCa------------UUUCUG-CUCC- -5'
28835 3' -52.8 NC_006146.1 + 43000 0.71 0.878692
Target:  5'- ---aUUGCCGCCGgGUGAgaGGuGCGAGGg -3'
miRNA:   3'- cggcAACGGUGGCgCAUU--UC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 170068 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 129856 0.72 0.840479
Target:  5'- gGCCcccaggGCCGCCGCG----GACGGGGg -3'
miRNA:   3'- -CGGcaa---CGGUGGCGCauuuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 33260 0.72 0.823824
Target:  5'- gGCCGcUGCC-CCGCuccGGGugGGGGg -3'
miRNA:   3'- -CGGCaACGGuGGCGcauUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 170212 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 167417 0.73 0.797555
Target:  5'- gGCgGggGCCAgCGCGgggucccGGGGCGGGGg -3'
miRNA:   3'- -CGgCaaCGGUgGCGCau-----UUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 84996 0.68 0.959292
Target:  5'- aGCUGggGuCCAUCGCG-AGAGGCaGAGa -3'
miRNA:   3'- -CGGCaaC-GGUGGCGCaUUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 89785 0.68 0.955557
Target:  5'- --aGggGCCcaugGCCGUGgacGAGGACGAGGc -3'
miRNA:   3'- cggCaaCGG----UGGCGCa--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 160760 0.69 0.938317
Target:  5'- aGCUGgucucUGCCACUuuGuCGUccGGGGGCGAGGg -3'
miRNA:   3'- -CGGCa----ACGGUGG--C-GCA--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 164306 0.7 0.911443
Target:  5'- cGCCGggGCCACUGcCGUugcuguuGuCGGGGu -3'
miRNA:   3'- -CGGCaaCGGUGGC-GCAuuu----CuGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.