miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 3' -52.8 NC_006146.1 + 150795 0.69 0.94021
Target:  5'- uGCCGg-GCCACCGUGUccagcuuguagucagAGAGGCuGAGc -3'
miRNA:   3'- -CGGCaaCGGUGGCGCA---------------UUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 43000 0.71 0.878692
Target:  5'- ---aUUGCCGCCGgGUGAgaGGuGCGAGGg -3'
miRNA:   3'- cggcAACGGUGGCgCAUU--UC-UGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 123352 0.67 0.977238
Target:  5'- aCgGUUGUagGCCGCGagGAGGAcCGAGGc -3'
miRNA:   3'- cGgCAACGg-UGGCGCa-UUUCU-GCUCC- -5'
28835 3' -52.8 NC_006146.1 + 89319 0.71 0.876547
Target:  5'- cCCGUUGCCccuguagcaucguuGCUGgGUGAcuACGAGGa -3'
miRNA:   3'- cGGCAACGG--------------UGGCgCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 131096 0.66 0.988548
Target:  5'- gGCCGUcaacgGCCGCCGUcccaGAAGcCGGGa -3'
miRNA:   3'- -CGGCAa----CGGUGGCGca--UUUCuGCUCc -5'
28835 3' -52.8 NC_006146.1 + 167272 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 170068 0.71 0.878692
Target:  5'- cCCGggGCCG-CGCGUGGGGAUggccggcggGAGGg -3'
miRNA:   3'- cGGCaaCGGUgGCGCAUUUCUG---------CUCC- -5'
28835 3' -52.8 NC_006146.1 + 66301 0.66 0.987054
Target:  5'- aGUCGcgGCCAUCGUc-GGAGACGuGGu -3'
miRNA:   3'- -CGGCaaCGGUGGCGcaUUUCUGCuCC- -5'
28835 3' -52.8 NC_006146.1 + 71213 0.66 0.986578
Target:  5'- -gCGggGCCGuaGCGUgcuagaauugguggGAGGugGAGGg -3'
miRNA:   3'- cgGCaaCGGUggCGCA--------------UUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 99601 0.66 0.983622
Target:  5'- gGCCGcggUGCU-CUGCGUAGc-ACGAGGc -3'
miRNA:   3'- -CGGCa--ACGGuGGCGCAUUucUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 43487 0.67 0.981667
Target:  5'- gGCCGUUGaCACCGgcucCGgc--GGCGGGGc -3'
miRNA:   3'- -CGGCAACgGUGGC----GCauuuCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 56322 0.67 0.979541
Target:  5'- gGCCGUaGCUgcGCCGCGaGAAG--GAGGc -3'
miRNA:   3'- -CGGCAaCGG--UGGCGCaUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 113958 0.67 0.979541
Target:  5'- --aGUaUGCUGCCGUGgccAGGCGGGGa -3'
miRNA:   3'- cggCA-ACGGUGGCGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 94945 0.71 0.864026
Target:  5'- -aCGUgGCCGCUGCGgu-AGAgGGGGg -3'
miRNA:   3'- cgGCAaCGGUGGCGCauuUCUgCUCC- -5'
28835 3' -52.8 NC_006146.1 + 34152 0.67 0.97475
Target:  5'- cCCGgaGCC-CCgGCG-AGGGugGGGGg -3'
miRNA:   3'- cGGCaaCGGuGG-CGCaUUUCugCUCC- -5'
28835 3' -52.8 NC_006146.1 + 60620 0.68 0.966104
Target:  5'- cGCCGagGCCAUCaUGgc-AGACGGGGc -3'
miRNA:   3'- -CGGCaaCGGUGGcGCauuUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 84996 0.68 0.959292
Target:  5'- aGCUGggGuCCAUCGCG-AGAGGCaGAGa -3'
miRNA:   3'- -CGGCaaC-GGUGGCGCaUUUCUG-CUCc -5'
28835 3' -52.8 NC_006146.1 + 89785 0.68 0.955557
Target:  5'- --aGggGCCcaugGCCGUGgacGAGGACGAGGc -3'
miRNA:   3'- cggCaaCGG----UGGCGCa--UUUCUGCUCC- -5'
28835 3' -52.8 NC_006146.1 + 149268 0.69 0.93342
Target:  5'- uGCCG-UGCCGcuCCGCGU--AGGCcGGGu -3'
miRNA:   3'- -CGGCaACGGU--GGCGCAuuUCUGcUCC- -5'
28835 3' -52.8 NC_006146.1 + 4663 0.7 0.911443
Target:  5'- cGCCGU--CCuggGCCGgGUGggcGAGGCGGGGg -3'
miRNA:   3'- -CGGCAacGG---UGGCgCAU---UUCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.