Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 95830 | 0.66 | 0.947143 |
Target: 5'- uGGCCcCGgcuccagauccUGUacUGGCcCCGGCUCCAGa -3' miRNA: 3'- -CCGGaGCa----------GCA--ACCGaGGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 62385 | 0.66 | 0.947143 |
Target: 5'- gGGCCUCGgccUGggguaaGGUUaUCGACUCCGGa -3' miRNA: 3'- -CCGGAGCa--GCaa----CCGA-GGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 159488 | 0.66 | 0.947143 |
Target: 5'- uGGCCUgGUCcugcaGGCUCugcuuuuccagCAGCUCCAc -3' miRNA: 3'- -CCGGAgCAGcaa--CCGAG-----------GUUGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 127653 | 0.66 | 0.942742 |
Target: 5'- uGCCUC-UCGgugGGCUaUCugcuGCUCCAGg -3' miRNA: 3'- cCGGAGcAGCaa-CCGA-GGu---UGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 42766 | 0.66 | 0.93811 |
Target: 5'- cGGCCUacgaGUUGgaucgUGGCUCgCGcCUCCuGg -3' miRNA: 3'- -CCGGAg---CAGCa----ACCGAG-GUuGAGGuC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 78818 | 0.66 | 0.93811 |
Target: 5'- aGGCCcacgCGUCca-GGCagCCGugUCCGGg -3' miRNA: 3'- -CCGGa---GCAGcaaCCGa-GGUugAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 89679 | 0.66 | 0.93811 |
Target: 5'- cGGCCUCGcUUGgaUGGCUUCAcCUUgGGc -3' miRNA: 3'- -CCGGAGC-AGCa-ACCGAGGUuGAGgUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 115126 | 0.66 | 0.933245 |
Target: 5'- aGGCCccUGUUGUUGcGCagCAGCUCCu- -3' miRNA: 3'- -CCGGa-GCAGCAAC-CGagGUUGAGGuc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 95765 | 0.66 | 0.928146 |
Target: 5'- cGGUUUUGgacucUGUacUGGCcCCGGCUCCAGa -3' miRNA: 3'- -CCGGAGCa----GCA--ACCGaGGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 40029 | 0.66 | 0.928146 |
Target: 5'- gGGCCU-GcUGggGGCcguagCCGACUCCGGc -3' miRNA: 3'- -CCGGAgCaGCaaCCGa----GGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 156578 | 0.67 | 0.917242 |
Target: 5'- cGGCCcugCGUgaGUUcuccagcaGGUgcgCCAGCUCCAGg -3' miRNA: 3'- -CCGGa--GCAg-CAA--------CCGa--GGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 75873 | 0.67 | 0.917242 |
Target: 5'- cGCUccauUUGUCGgcgGGCUCCcguAAUUCCAGc -3' miRNA: 3'- cCGG----AGCAGCaa-CCGAGG---UUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 82940 | 0.67 | 0.917242 |
Target: 5'- aGGCCUCGuUUGgaaGGCUCuCAuUUCCAc -3' miRNA: 3'- -CCGGAGC-AGCaa-CCGAG-GUuGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 72983 | 0.67 | 0.917242 |
Target: 5'- gGGCCUCcgaGggGGCUCgccuCAGCUCCu- -3' miRNA: 3'- -CCGGAGcagCaaCCGAG----GUUGAGGuc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 33201 | 0.67 | 0.905403 |
Target: 5'- gGGCCUC--CGgguGCUCCugguGCUCCGGg -3' miRNA: 3'- -CCGGAGcaGCaacCGAGGu---UGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 168598 | 0.67 | 0.892644 |
Target: 5'- uGGCCUggaacUGUCGgaaggagGGC-CUGGCUCCGGu -3' miRNA: 3'- -CCGGA-----GCAGCaa-----CCGaGGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 145292 | 0.68 | 0.878988 |
Target: 5'- gGGCCUCGUaggUGUUGuuGUauUCUAGCUCCGu -3' miRNA: 3'- -CCGGAGCA---GCAAC--CG--AGGUUGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 52670 | 0.68 | 0.864469 |
Target: 5'- aGCCUCGcccccUCGUccaGGacaucgUCCAGCUCCGGg -3' miRNA: 3'- cCGGAGC-----AGCAa--CCg-----AGGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 113051 | 0.68 | 0.863721 |
Target: 5'- cGGCCUCGggguccaCGUUGGCcuugaccUUCAACUCa-- -3' miRNA: 3'- -CCGGAGCa------GCAACCG-------AGGUUGAGguc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 53479 | 0.68 | 0.856899 |
Target: 5'- uGCCUCGUCGgucagGGCcgggggugcggUCUGGCUCUGGc -3' miRNA: 3'- cCGGAGCAGCaa---CCG-----------AGGUUGAGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home