miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 5' -55.5 NC_006146.1 + 43475 0.69 0.849128
Target:  5'- aGCCUCcUCGgcGGCcguugacaCCGGCUCCGGc -3'
miRNA:   3'- cCGGAGcAGCaaCCGa-------GGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 127955 0.69 0.833014
Target:  5'- gGGCCUCGUCGcgGGagUCC---UCCGGa -3'
miRNA:   3'- -CCGGAGCAGCaaCCg-AGGuugAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 163923 0.69 0.812735
Target:  5'- gGGCCUUGUUGggGGCcaauuuucgcaugCCAuACUCCAc -3'
miRNA:   3'- -CCGGAGCAGCaaCCGa------------GGU-UGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 160018 0.7 0.798694
Target:  5'- gGGCCUUGaCGUUGauGCUgaagcCCGGCUCCAc -3'
miRNA:   3'- -CCGGAGCaGCAAC--CGA-----GGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 99127 0.7 0.771374
Target:  5'- cGGCCUCaggCGUcuccacaggGGCUCCAGCgaCCGGc -3'
miRNA:   3'- -CCGGAGca-GCAa--------CCGAGGUUGa-GGUC- -5'
28835 5' -55.5 NC_006146.1 + 157564 0.71 0.742956
Target:  5'- uGGCCUcCG-CGUaGGCcgcggCCGACUCCAc -3'
miRNA:   3'- -CCGGA-GCaGCAaCCGa----GGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 61442 0.71 0.742956
Target:  5'- uGGaCUCGUgGggGaGCUCCAGCUCUAc -3'
miRNA:   3'- -CCgGAGCAgCaaC-CGAGGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 39670 0.72 0.674743
Target:  5'- uGGCCUUGgaggCGgcgGGCUCCugggccugcagcgccGCUCCGGa -3'
miRNA:   3'- -CCGGAGCa---GCaa-CCGAGGu--------------UGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 88867 0.72 0.653527
Target:  5'- gGGCCUggggcUGUUG-UGGCUgCAACUCCAc -3'
miRNA:   3'- -CCGGA-----GCAGCaACCGAgGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 42552 0.74 0.542798
Target:  5'- gGGCCUgucCGUcCGUcGGCUUCAuCUCCAGg -3'
miRNA:   3'- -CCGGA---GCA-GCAaCCGAGGUuGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 117585 0.77 0.421237
Target:  5'- gGGCCUCcUCG--GGCUCgGACUCCGGc -3'
miRNA:   3'- -CCGGAGcAGCaaCCGAGgUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 167012 0.77 0.387222
Target:  5'- gGGCCUCGUCGgugGGCcucgCCGAgaCCAGc -3'
miRNA:   3'- -CCGGAGCAGCaa-CCGa---GGUUgaGGUC- -5'
28835 5' -55.5 NC_006146.1 + 69321 1.1 0.003417
Target:  5'- gGGCCUCGUCGUUGGCUCCAACUCCAGc -3'
miRNA:   3'- -CCGGAGCAGCAACCGAGGUUGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.