miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 5' -55.5 NC_006146.1 + 33201 0.67 0.905403
Target:  5'- gGGCCUC--CGgguGCUCCugguGCUCCGGg -3'
miRNA:   3'- -CCGGAGcaGCaacCGAGGu---UGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 39670 0.72 0.674743
Target:  5'- uGGCCUUGgaggCGgcgGGCUCCugggccugcagcgccGCUCCGGa -3'
miRNA:   3'- -CCGGAGCa---GCaa-CCGAGGu--------------UGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 40029 0.66 0.928146
Target:  5'- gGGCCU-GcUGggGGCcguagCCGACUCCGGc -3'
miRNA:   3'- -CCGGAgCaGCaaCCGa----GGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 42552 0.74 0.542798
Target:  5'- gGGCCUgucCGUcCGUcGGCUUCAuCUCCAGg -3'
miRNA:   3'- -CCGGA---GCA-GCAaCCGAGGUuGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 42766 0.66 0.93811
Target:  5'- cGGCCUacgaGUUGgaucgUGGCUCgCGcCUCCuGg -3'
miRNA:   3'- -CCGGAg---CAGCa----ACCGAG-GUuGAGGuC- -5'
28835 5' -55.5 NC_006146.1 + 43475 0.69 0.849128
Target:  5'- aGCCUCcUCGgcGGCcguugacaCCGGCUCCGGc -3'
miRNA:   3'- cCGGAGcAGCaaCCGa-------GGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 52670 0.68 0.864469
Target:  5'- aGCCUCGcccccUCGUccaGGacaucgUCCAGCUCCGGg -3'
miRNA:   3'- cCGGAGC-----AGCAa--CCg-----AGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 53479 0.68 0.856899
Target:  5'- uGCCUCGUCGgucagGGCcgggggugcggUCUGGCUCUGGc -3'
miRNA:   3'- cCGGAGCAGCaa---CCG-----------AGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 61442 0.71 0.742956
Target:  5'- uGGaCUCGUgGggGaGCUCCAGCUCUAc -3'
miRNA:   3'- -CCgGAGCAgCaaC-CGAGGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 62385 0.66 0.947143
Target:  5'- gGGCCUCGgccUGggguaaGGUUaUCGACUCCGGa -3'
miRNA:   3'- -CCGGAGCa--GCaa----CCGA-GGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 69321 1.1 0.003417
Target:  5'- gGGCCUCGUCGUUGGCUCCAACUCCAGc -3'
miRNA:   3'- -CCGGAGCAGCAACCGAGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 72983 0.67 0.917242
Target:  5'- gGGCCUCcgaGggGGCUCgccuCAGCUCCu- -3'
miRNA:   3'- -CCGGAGcagCaaCCGAG----GUUGAGGuc -5'
28835 5' -55.5 NC_006146.1 + 75873 0.67 0.917242
Target:  5'- cGCUccauUUGUCGgcgGGCUCCcguAAUUCCAGc -3'
miRNA:   3'- cCGG----AGCAGCaa-CCGAGG---UUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 78818 0.66 0.93811
Target:  5'- aGGCCcacgCGUCca-GGCagCCGugUCCGGg -3'
miRNA:   3'- -CCGGa---GCAGcaaCCGa-GGUugAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 82940 0.67 0.917242
Target:  5'- aGGCCUCGuUUGgaaGGCUCuCAuUUCCAc -3'
miRNA:   3'- -CCGGAGC-AGCaa-CCGAG-GUuGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 88867 0.72 0.653527
Target:  5'- gGGCCUggggcUGUUG-UGGCUgCAACUCCAc -3'
miRNA:   3'- -CCGGA-----GCAGCaACCGAgGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 89679 0.66 0.93811
Target:  5'- cGGCCUCGcUUGgaUGGCUUCAcCUUgGGc -3'
miRNA:   3'- -CCGGAGC-AGCa-ACCGAGGUuGAGgUC- -5'
28835 5' -55.5 NC_006146.1 + 95765 0.66 0.928146
Target:  5'- cGGUUUUGgacucUGUacUGGCcCCGGCUCCAGa -3'
miRNA:   3'- -CCGGAGCa----GCA--ACCGaGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 95830 0.66 0.947143
Target:  5'- uGGCCcCGgcuccagauccUGUacUGGCcCCGGCUCCAGa -3'
miRNA:   3'- -CCGGaGCa----------GCA--ACCGaGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 99127 0.7 0.771374
Target:  5'- cGGCCUCaggCGUcuccacaggGGCUCCAGCgaCCGGc -3'
miRNA:   3'- -CCGGAGca-GCAa--------CCGAGGUUGa-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.