Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 113051 | 0.68 | 0.863721 |
Target: 5'- cGGCCUCGggguccaCGUUGGCcuugaccUUCAACUCa-- -3' miRNA: 3'- -CCGGAGCa------GCAACCG-------AGGUUGAGguc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 115126 | 0.66 | 0.933245 |
Target: 5'- aGGCCccUGUUGUUGcGCagCAGCUCCu- -3' miRNA: 3'- -CCGGa-GCAGCAAC-CGagGUUGAGGuc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 117585 | 0.77 | 0.421237 |
Target: 5'- gGGCCUCcUCG--GGCUCgGACUCCGGc -3' miRNA: 3'- -CCGGAGcAGCaaCCGAGgUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 127653 | 0.66 | 0.942742 |
Target: 5'- uGCCUC-UCGgugGGCUaUCugcuGCUCCAGg -3' miRNA: 3'- cCGGAGcAGCaa-CCGA-GGu---UGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 127955 | 0.69 | 0.833014 |
Target: 5'- gGGCCUCGUCGcgGGagUCC---UCCGGa -3' miRNA: 3'- -CCGGAGCAGCaaCCg-AGGuugAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 145292 | 0.68 | 0.878988 |
Target: 5'- gGGCCUCGUaggUGUUGuuGUauUCUAGCUCCGu -3' miRNA: 3'- -CCGGAGCA---GCAAC--CG--AGGUUGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 156578 | 0.67 | 0.917242 |
Target: 5'- cGGCCcugCGUgaGUUcuccagcaGGUgcgCCAGCUCCAGg -3' miRNA: 3'- -CCGGa--GCAg-CAA--------CCGa--GGUUGAGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 157564 | 0.71 | 0.742956 |
Target: 5'- uGGCCUcCG-CGUaGGCcgcggCCGACUCCAc -3' miRNA: 3'- -CCGGA-GCaGCAaCCGa----GGUUGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 159488 | 0.66 | 0.947143 |
Target: 5'- uGGCCUgGUCcugcaGGCUCugcuuuuccagCAGCUCCAc -3' miRNA: 3'- -CCGGAgCAGcaa--CCGAG-----------GUUGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 160018 | 0.7 | 0.798694 |
Target: 5'- gGGCCUUGaCGUUGauGCUgaagcCCGGCUCCAc -3' miRNA: 3'- -CCGGAGCaGCAAC--CGA-----GGUUGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 163923 | 0.69 | 0.812735 |
Target: 5'- gGGCCUUGUUGggGGCcaauuuucgcaugCCAuACUCCAc -3' miRNA: 3'- -CCGGAGCAGCaaCCGa------------GGU-UGAGGUc -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 167012 | 0.77 | 0.387222 |
Target: 5'- gGGCCUCGUCGgugGGCcucgCCGAgaCCAGc -3' miRNA: 3'- -CCGGAGCAGCaa-CCGa---GGUUgaGGUC- -5' |
|||||||
28835 | 5' | -55.5 | NC_006146.1 | + | 168598 | 0.67 | 0.892644 |
Target: 5'- uGGCCUggaacUGUCGgaaggagGGC-CUGGCUCCGGu -3' miRNA: 3'- -CCGGA-----GCAGCaa-----CCGaGGUUGAGGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home