miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28835 5' -55.5 NC_006146.1 + 43475 0.69 0.849128
Target:  5'- aGCCUCcUCGgcGGCcguugacaCCGGCUCCGGc -3'
miRNA:   3'- cCGGAGcAGCaaCCGa-------GGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 160018 0.7 0.798694
Target:  5'- gGGCCUUGaCGUUGauGCUgaagcCCGGCUCCAc -3'
miRNA:   3'- -CCGGAGCaGCAAC--CGA-----GGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 99127 0.7 0.771374
Target:  5'- cGGCCUCaggCGUcuccacaggGGCUCCAGCgaCCGGc -3'
miRNA:   3'- -CCGGAGca-GCAa--------CCGAGGUUGa-GGUC- -5'
28835 5' -55.5 NC_006146.1 + 157564 0.71 0.742956
Target:  5'- uGGCCUcCG-CGUaGGCcgcggCCGACUCCAc -3'
miRNA:   3'- -CCGGA-GCaGCAaCCGa----GGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 82940 0.67 0.917242
Target:  5'- aGGCCUCGuUUGgaaGGCUCuCAuUUCCAc -3'
miRNA:   3'- -CCGGAGC-AGCaa-CCGAG-GUuGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 33201 0.67 0.905403
Target:  5'- gGGCCUC--CGgguGCUCCugguGCUCCGGg -3'
miRNA:   3'- -CCGGAGcaGCaacCGAGGu---UGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 42766 0.66 0.93811
Target:  5'- cGGCCUacgaGUUGgaucgUGGCUCgCGcCUCCuGg -3'
miRNA:   3'- -CCGGAg---CAGCa----ACCGAG-GUuGAGGuC- -5'
28835 5' -55.5 NC_006146.1 + 115126 0.66 0.933245
Target:  5'- aGGCCccUGUUGUUGcGCagCAGCUCCu- -3'
miRNA:   3'- -CCGGa-GCAGCAAC-CGagGUUGAGGuc -5'
28835 5' -55.5 NC_006146.1 + 156578 0.67 0.917242
Target:  5'- cGGCCcugCGUgaGUUcuccagcaGGUgcgCCAGCUCCAGg -3'
miRNA:   3'- -CCGGa--GCAg-CAA--------CCGa--GGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 145292 0.68 0.878988
Target:  5'- gGGCCUCGUaggUGUUGuuGUauUCUAGCUCCGu -3'
miRNA:   3'- -CCGGAGCA---GCAAC--CG--AGGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 53479 0.68 0.856899
Target:  5'- uGCCUCGUCGgucagGGCcgggggugcggUCUGGCUCUGGc -3'
miRNA:   3'- cCGGAGCAGCaa---CCG-----------AGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 127653 0.66 0.942742
Target:  5'- uGCCUC-UCGgugGGCUaUCugcuGCUCCAGg -3'
miRNA:   3'- cCGGAGcAGCaa-CCGA-GGu---UGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 52670 0.68 0.864469
Target:  5'- aGCCUCGcccccUCGUccaGGacaucgUCCAGCUCCGGg -3'
miRNA:   3'- cCGGAGC-----AGCAa--CCg-----AGGUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 75873 0.67 0.917242
Target:  5'- cGCUccauUUGUCGgcgGGCUCCcguAAUUCCAGc -3'
miRNA:   3'- cCGG----AGCAGCaa-CCGAGG---UUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 159488 0.66 0.947143
Target:  5'- uGGCCUgGUCcugcaGGCUCugcuuuuccagCAGCUCCAc -3'
miRNA:   3'- -CCGGAgCAGcaa--CCGAG-----------GUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 163923 0.69 0.812735
Target:  5'- gGGCCUUGUUGggGGCcaauuuucgcaugCCAuACUCCAc -3'
miRNA:   3'- -CCGGAGCAGCaaCCGa------------GGU-UGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 117585 0.77 0.421237
Target:  5'- gGGCCUCcUCG--GGCUCgGACUCCGGc -3'
miRNA:   3'- -CCGGAGcAGCaaCCGAGgUUGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 42552 0.74 0.542798
Target:  5'- gGGCCUgucCGUcCGUcGGCUUCAuCUCCAGg -3'
miRNA:   3'- -CCGGA---GCA-GCAaCCGAGGUuGAGGUC- -5'
28835 5' -55.5 NC_006146.1 + 88867 0.72 0.653527
Target:  5'- gGGCCUggggcUGUUG-UGGCUgCAACUCCAc -3'
miRNA:   3'- -CCGGA-----GCAGCaACCGAgGUUGAGGUc -5'
28835 5' -55.5 NC_006146.1 + 39670 0.72 0.674743
Target:  5'- uGGCCUUGgaggCGgcgGGCUCCugggccugcagcgccGCUCCGGa -3'
miRNA:   3'- -CCGGAGCa---GCaa-CCGAGGu--------------UGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.