Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 23766 | 0.69 | 0.892063 |
|
Target: 5'- uUUUGUC-UCCGCGugcgcauaauggcGGCCCUGGACc -3' miRNA: 3'- gAGACAGuAGGCGCu------------CUGGGACUUGc -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 20688 | 0.69 | 0.892063 |
|
Target: 5'- uUUUGUC-UCCGCGugcgcauaauggcGGCCCUGGACc -3' miRNA: 3'- gAGACAGuAGGCGCu------------CUGGGACUUGc -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 17610 | 0.69 | 0.892063 |
|
Target: 5'- uUUUGUC-UCCGCGugcgcauaauggcGGCCCUGGACc -3' miRNA: 3'- gAGACAGuAGGCGCu------------CUGGGACUUGc -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 14532 | 0.69 | 0.892063 |
|
Target: 5'- uUUUGUC-UCCGCGugcgcauaauggcGGCCCUGGACc -3' miRNA: 3'- gAGACAGuAGGCGCu------------CUGGGACUUGc -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 89658 | 0.7 | 0.824251 |
|
Target: 5'- gCUCUGUUcuagugugaaucauGUCCGacggaaGGGGCCCgggGAACGg -3' miRNA: 3'- -GAGACAG--------------UAGGCg-----CUCUGGGa--CUUGC- -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 104627 | 0.71 | 0.79173 |
|
Target: 5'- aUCUGaUCAggaggacCCGCGAGACCCUGc--- -3' miRNA: 3'- gAGAC-AGUa------GGCGCUCUGGGACuugc -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 106405 | 0.73 | 0.729145 |
|
Target: 5'- cCUgUGcCAcggUCCGCcacaacaagguggugGAGACCCUGAGCGg -3' miRNA: 3'- -GAgACaGU---AGGCG---------------CUCUGGGACUUGC- -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 114696 | 0.77 | 0.475414 |
|
Target: 5'- gCUCgcgGcUCGUCCGCGAGACCC-GGGCc -3' miRNA: 3'- -GAGa--C-AGUAGGCGCUCUGGGaCUUGc -5' |
|||||||
| 28836 | 3' | -54.1 | NC_006146.1 | + | 68415 | 1.09 | 0.005573 |
|
Target: 5'- aCUCUGUCAUCCGCGAGACCCUGAACGc -3' miRNA: 3'- -GAGACAGUAGGCGCUCUGGGACUUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home