miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28836 5' -51.7 NC_006146.1 + 129052 0.68 0.969907
Target:  5'- --gCUGGGcccaGAcGCCgGCGCAGACAGCc -3'
miRNA:   3'- gagGACCU----UU-CGGaUGCGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 13511 0.68 0.966772
Target:  5'- -aCCUGGGcuacuuuauGGGCCgagGCGUGGACAGgAa -3'
miRNA:   3'- gaGGACCU---------UUCGGa--UGCGUCUGUUgU- -5'
28836 5' -51.7 NC_006146.1 + 102935 0.68 0.963414
Target:  5'- aUCgUGGGcuGCCUGCGCAG-CAu-- -3'
miRNA:   3'- gAGgACCUuuCGGAUGCGUCuGUugu -5'
28836 5' -51.7 NC_006146.1 + 45042 0.68 0.959825
Target:  5'- uUCgaGGAGGGCCU-CGCGGGCc--- -3'
miRNA:   3'- gAGgaCCUUUCGGAuGCGUCUGuugu -5'
28836 5' -51.7 NC_006146.1 + 103583 0.68 0.956001
Target:  5'- -gCCUGGGccGGGCUcaGCGCGGACGugGc -3'
miRNA:   3'- gaGGACCU--UUCGGa-UGCGUCUGUugU- -5'
28836 5' -51.7 NC_006146.1 + 85934 0.69 0.951937
Target:  5'- -gCCUGGAuGGCCUGCG-GGACuuuGCc -3'
miRNA:   3'- gaGGACCUuUCGGAUGCgUCUGu--UGu -5'
28836 5' -51.7 NC_006146.1 + 46559 0.69 0.951937
Target:  5'- uUCCUGGAGgcgaucaggguGGCgUGCGCcaGCAGCGu -3'
miRNA:   3'- gAGGACCUU-----------UCGgAUGCGucUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 21389 0.69 0.951937
Target:  5'- aUCCUcaacGAGGCCUAUGCGGACcuCAg -3'
miRNA:   3'- gAGGAcc--UUUCGGAUGCGUCUGuuGU- -5'
28836 5' -51.7 NC_006146.1 + 104662 0.69 0.947629
Target:  5'- -aCCgUGGAGAauGCCUGCGCcgcgauagagGGGCAGCu -3'
miRNA:   3'- gaGG-ACCUUU--CGGAUGCG----------UCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 103839 0.69 0.947629
Target:  5'- -aCCUGGGAGaagaggguGCUcaaaACGCGGGCGACAg -3'
miRNA:   3'- gaGGACCUUU--------CGGa---UGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 123069 0.69 0.947629
Target:  5'- gUCCUcGAGAGCC-GCGCucuGGCAGCc -3'
miRNA:   3'- gAGGAcCUUUCGGaUGCGu--CUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 129918 0.69 0.947629
Target:  5'- -cCCUGGGgcGCCgGCGCGGcaccACGGCGg -3'
miRNA:   3'- gaGGACCUuuCGGaUGCGUC----UGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 127842 0.69 0.947629
Target:  5'- -cCCUGGAGggugGGCUUGgGCAGcCGGCGu -3'
miRNA:   3'- gaGGACCUU----UCGGAUgCGUCuGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 4978 0.69 0.943073
Target:  5'- cCUCCUGGc-GGCCUcacuaACGCGGGguGCc -3'
miRNA:   3'- -GAGGACCuuUCGGA-----UGCGUCUguUGu -5'
28836 5' -51.7 NC_006146.1 + 71926 0.69 0.943073
Target:  5'- -aCCUGGGccugaccuGGGCCUAUGCcGACGAg- -3'
miRNA:   3'- gaGGACCU--------UUCGGAUGCGuCUGUUgu -5'
28836 5' -51.7 NC_006146.1 + 18654 0.69 0.938266
Target:  5'- -gCCaGGGAucgcaugcccGGCCUuCGCAGGCGACGc -3'
miRNA:   3'- gaGGaCCUU----------UCGGAuGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 73995 0.69 0.933206
Target:  5'- aCUCCUGGAAacugaccaccacGGCCUcACGCuGGAgAAUg -3'
miRNA:   3'- -GAGGACCUU------------UCGGA-UGCG-UCUgUUGu -5'
28836 5' -51.7 NC_006146.1 + 48217 0.7 0.927893
Target:  5'- --aCUGGAGGGCCUggcGCGCcugGGugAGCGc -3'
miRNA:   3'- gagGACCUUUCGGA---UGCG---UCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 76091 0.7 0.924583
Target:  5'- uUCCUGGuggGcaacccccgggccucGGCCUACGUGGACGugGc -3'
miRNA:   3'- gAGGACCu--U---------------UCGGAUGCGUCUGUugU- -5'
28836 5' -51.7 NC_006146.1 + 17003 0.7 0.924583
Target:  5'- uCUCCUGGAAgcucgaaaacagaacGGCCUACuGCccacuGCAACAc -3'
miRNA:   3'- -GAGGACCUU---------------UCGGAUG-CGuc---UGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.