miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 77830 0.67 0.851061
Target:  5'- gACGgCgGAGGGggGGGCGGGG--GGGUg -3'
miRNA:   3'- -UGCaGgCUCCUa-CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141723 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 144801 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 147879 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 150957 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 40292 0.67 0.858714
Target:  5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3'
miRNA:   3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 120506 0.67 0.86172
Target:  5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3'
miRNA:   3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5'
28837 3' -57.3 NC_006146.1 + 139130 0.67 0.826982
Target:  5'- gGC-UCCGA---UGGcGCAGGugGGGGCa -3'
miRNA:   3'- -UGcAGGCUccuACC-CGUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154637 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 151559 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 148481 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 145403 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 142325 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 125619 0.68 0.783539
Target:  5'- ---aCCGAGGGUgGGGCAuGGGCu-GGUg -3'
miRNA:   3'- ugcaGGCUCCUA-CCCGU-CCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 156688 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 153611 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 150533 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144377 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141299 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.