miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 3778 0.69 0.755834
Target:  5'- uACG-CgGGGGGgggGGGgGGGGgGGGGCa -3'
miRNA:   3'- -UGCaGgCUCCUa--CCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139361 0.69 0.704721
Target:  5'- gGCGgcgCCGGGGG-GGGUgccugcuguuuaguAGGAgAAGGCc -3'
miRNA:   3'- -UGCa--GGCUCCUaCCCG--------------UCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 140046 0.69 0.745426
Target:  5'- cACGUCCcugcguucuggugGAGGAgguugaacagGGGguGGugGAGGg -3'
miRNA:   3'- -UGCAGG-------------CUCCUa---------CCCguCCugUUCCg -5'
28837 3' -57.3 NC_006146.1 + 168242 0.69 0.727183
Target:  5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 167310 0.69 0.727183
Target:  5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 85566 0.69 0.717462
Target:  5'- -gGUCgGGGGcacGUGGGguGGcAgGAGGCa -3'
miRNA:   3'- ugCAGgCUCC---UACCCguCC-UgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155542 0.69 0.755835
Target:  5'- cGCGUCCGAGaGGgcguUGGaGcCGGGcucgcGCGGGGCg -3'
miRNA:   3'- -UGCAGGCUC-CU----ACC-C-GUCC-----UGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 91186 0.69 0.736824
Target:  5'- ----aUGAGGGUGcGGCGGGGCAGGaGUg -3'
miRNA:   3'- ugcagGCUCCUAC-CCGUCCUGUUC-CG- -5'
28837 3' -57.3 NC_006146.1 + 86298 0.69 0.734903
Target:  5'- cUGUCCGgcauggcuggaguAGGAggcccUGGGCAGGGucuugauCAGGGCc -3'
miRNA:   3'- uGCAGGC-------------UCCU-----ACCCGUCCU-------GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 169174 0.69 0.727183
Target:  5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 64553 0.69 0.755835
Target:  5'- -aGUCUcGGGuguUGGGCAGGaaGCAGGGg -3'
miRNA:   3'- ugCAGGcUCCu--ACCCGUCC--UGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 51444 0.7 0.697819
Target:  5'- -gGUgUGGaGAUGGGCGGGACuaGAGGUg -3'
miRNA:   3'- ugCAgGCUcCUACCCGUCCUG--UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 170293 0.7 0.697819
Target:  5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3'
miRNA:   3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 49788 0.7 0.697818
Target:  5'- gUGUCUcAGGAgGGGCAGGAagauGGGUg -3'
miRNA:   3'- uGCAGGcUCCUaCCCGUCCUgu--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 11742 0.7 0.687912
Target:  5'- gUGUCCaaGAcGAccgGGGCAGGGCAAGGa -3'
miRNA:   3'- uGCAGG--CUcCUa--CCCGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 56241 0.7 0.657961
Target:  5'- -gGUCCGcGG--GGGCGGaGGCGGGGCc -3'
miRNA:   3'- ugCAGGCuCCuaCCCGUC-CUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 110874 0.7 0.686919
Target:  5'- uGCGUCUcGGGcucGGGCgcaggcgGGGACGGGGCc -3'
miRNA:   3'- -UGCAGGcUCCua-CCCG-------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 167498 0.7 0.697819
Target:  5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3'
miRNA:   3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 168430 0.7 0.697819
Target:  5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3'
miRNA:   3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 169362 0.7 0.697819
Target:  5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3'
miRNA:   3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.