miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 122219 0.68 0.798729
Target:  5'- gGCGggCGAGGGaggccggcgaagcaUGGGcCAGGAUucagAAGGCg -3'
miRNA:   3'- -UGCagGCUCCU--------------ACCC-GUCCUG----UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 32131 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 135961 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 33994 0.68 0.796078
Target:  5'- -gGUCCGgugcaccuggaaggcAGGGgggGGGuCGGGGCAggcGGGCg -3'
miRNA:   3'- ugCAGGC---------------UCCUa--CCC-GUCCUGU---UCCG- -5'
28837 3' -57.3 NC_006146.1 + 95583 0.68 0.782633
Target:  5'- gGCGUCCGAGGucAUGuucaGCAugaacguGGACGAGaGCg -3'
miRNA:   3'- -UGCAGGCUCC--UACc---CGU-------CCUGUUC-CG- -5'
28837 3' -57.3 NC_006146.1 + 57043 0.68 0.765186
Target:  5'- gGCGaagCCGccAGGGuUGaGGCGGGAgGGGGCc -3'
miRNA:   3'- -UGCa--GGC--UCCU-AC-CCGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 156688 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 81667 0.68 0.774424
Target:  5'- -gGUgCCGGGGAaGcGGCGGGACAaauuGGGg -3'
miRNA:   3'- ugCA-GGCUCCUaC-CCGUCCUGU----UCCg -5'
28837 3' -57.3 NC_006146.1 + 157336 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 151180 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141299 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144377 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 150533 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 148102 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 153611 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 145024 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154258 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 154035 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 40292 0.67 0.858714
Target:  5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3'
miRNA:   3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.