Results 101 - 120 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 150443 | 0.67 | 0.818605 |
Target: 5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3' miRNA: 3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 147365 | 0.67 | 0.818605 |
Target: 5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3' miRNA: 3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 153521 | 0.67 | 0.818605 |
Target: 5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3' miRNA: 3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 144287 | 0.67 | 0.818605 |
Target: 5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3' miRNA: 3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 99547 | 0.67 | 0.818605 |
Target: 5'- -aGUCCGAGcccccgGGGCAGaGAuCGGGGUc -3' miRNA: 3'- ugCAGGCUCcua---CCCGUC-CU-GUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 141209 | 0.67 | 0.818605 |
Target: 5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3' miRNA: 3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 72196 | 0.67 | 0.818605 |
Target: 5'- cGCGg-CGGccGGAUGGGCGGGAgacCAGcGGCc -3' miRNA: 3'- -UGCagGCU--CCUACCCGUCCU---GUU-CCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 150957 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 43616 | 0.67 | 0.835189 |
Target: 5'- -gGUCgGGGGAagagggagUGGGCggcGGGGCGuGGCc -3' miRNA: 3'- ugCAGgCUCCU--------ACCCG---UCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 157113 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 40292 | 0.67 | 0.858714 |
Target: 5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3' miRNA: 3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 120506 | 0.67 | 0.86172 |
Target: 5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3' miRNA: 3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 155684 | 0.67 | 0.817758 |
Target: 5'- --uUCUGAGGAUggcccgguacugcGGGUucgAGGugAAGGCg -3' miRNA: 3'- ugcAGGCUCCUA-------------CCCG---UCCugUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 147879 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 144801 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 141723 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 77830 | 0.67 | 0.851061 |
Target: 5'- gACGgCgGAGGGggGGGCGGGG--GGGUg -3' miRNA: 3'- -UGCaGgCUCCUa-CCCGUCCUguUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 138810 | 0.67 | 0.849508 |
Target: 5'- -gGcCCGGGGuuggugagcuauUGGGCGcccGGACAGGGUu -3' miRNA: 3'- ugCaGGCUCCu-----------ACCCGU---CCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 154035 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 64236 | 0.67 | 0.835189 |
Target: 5'- uGCGcCUGGGccgGGGCGGGA-GGGGCg -3' miRNA: 3'- -UGCaGGCUCcuaCCCGUCCUgUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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