miRNA display CGI


Results 121 - 140 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 147365 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144287 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 64236 0.67 0.835189
Target:  5'- uGCGcCUGGGccgGGGCGGGA-GGGGCg -3'
miRNA:   3'- -UGCaGGCUCcuaCCCGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 138810 0.67 0.849508
Target:  5'- -gGcCCGGGGuuggugagcuauUGGGCGcccGGACAGGGUu -3'
miRNA:   3'- ugCaGGCUCCu-----------ACCCGU---CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 77830 0.67 0.851061
Target:  5'- gACGgCgGAGGGggGGGCGGGG--GGGUg -3'
miRNA:   3'- -UGCaGgCUCCUa-CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154035 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 150957 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 147879 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 144801 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 141723 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 144512 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 117807 0.66 0.865432
Target:  5'- cGCcUCCGGacuagacGGA-GGGgAGGAgGAGGCg -3'
miRNA:   3'- -UGcAGGCU-------CCUaCCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 116752 0.66 0.866168
Target:  5'- ----aCGAGGAggaGGGCAGGG--GGGCc -3'
miRNA:   3'- ugcagGCUCCUa--CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 94902 0.66 0.891946
Target:  5'- gGCGUCUGucuGGGUGGGCGaGcccacgcagacgauGCAGGGg -3'
miRNA:   3'- -UGCAGGCu--CCUACCCGUcC--------------UGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 99993 0.66 0.872704
Target:  5'- cGCGUCCucGGGAUcGGGagcGGGCAcgucgggAGGCg -3'
miRNA:   3'- -UGCAGGc-UCCUA-CCCgu-CCUGU-------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 139409 0.66 0.872704
Target:  5'- gGCG-CCGGGGGaGGugccugcuguuuaGUAGGAgAAGGCc -3'
miRNA:   3'- -UGCaGGCUCCUaCC-------------CGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 144557 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141479 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 158554 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141434 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.