miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 86298 0.69 0.734903
Target:  5'- cUGUCCGgcauggcuggaguAGGAggcccUGGGCAGGGucuugauCAGGGCc -3'
miRNA:   3'- uGCAGGC-------------UCCU-----ACCCGUCCU-------GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 91186 0.69 0.736824
Target:  5'- ----aUGAGGGUGcGGCGGGGCAGGaGUg -3'
miRNA:   3'- ugcagGCUCCUAC-CCGUCCUGUUC-CG- -5'
28837 3' -57.3 NC_006146.1 + 52975 0.69 0.736824
Target:  5'- --cUCCGcgGGGcgGGGCGGGcgucuCGAGGCc -3'
miRNA:   3'- ugcAGGC--UCCuaCCCGUCCu----GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 140046 0.69 0.745426
Target:  5'- cACGUCCcugcguucuggugGAGGAgguugaacagGGGguGGugGAGGg -3'
miRNA:   3'- -UGCAGG-------------CUCCUa---------CCCguCCugUUCCg -5'
28837 3' -57.3 NC_006146.1 + 3778 0.69 0.755834
Target:  5'- uACG-CgGGGGGgggGGGgGGGGgGGGGCa -3'
miRNA:   3'- -UGCaGgCUCCUa--CCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 64108 0.69 0.755834
Target:  5'- -gGUCCucGAGGAUGGcaCGGGugGAGGa -3'
miRNA:   3'- ugCAGG--CUCCUACCc-GUCCugUUCCg -5'
28837 3' -57.3 NC_006146.1 + 36232 0.69 0.755834
Target:  5'- cCGgCCGGGGAgGaGGCAGGGC--GGCu -3'
miRNA:   3'- uGCaGGCUCCUaC-CCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 111344 0.69 0.755834
Target:  5'- gGCGcaacCCGAGG-UGGGCAu--CAGGGCg -3'
miRNA:   3'- -UGCa---GGCUCCuACCCGUccuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155542 0.69 0.755835
Target:  5'- cGCGUCCGAGaGGgcguUGGaGcCGGGcucgcGCGGGGCg -3'
miRNA:   3'- -UGCAGGCUC-CU----ACC-C-GUCC-----UGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 64553 0.69 0.755835
Target:  5'- -aGUCUcGGGuguUGGGCAGGaaGCAGGGg -3'
miRNA:   3'- ugCAGGcUCCu--ACCCGUCC--UGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 145024 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 157336 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154258 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 151180 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 148102 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141946 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 57043 0.68 0.765186
Target:  5'- gGCGaagCCGccAGGGuUGaGGCGGGAgGGGGCc -3'
miRNA:   3'- -UGCa--GGC--UCCU-AC-CCGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 150502 0.68 0.773506
Target:  5'- cUGUCgGAGGcggagggcAUGGGUAGGAUAaaguucuccuucuGGGCc -3'
miRNA:   3'- uGCAGgCUCC--------UACCCGUCCUGU-------------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141299 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144377 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.