Results 81 - 100 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 95583 | 0.68 | 0.782633 |
Target: 5'- gGCGUCCGAGGucAUGuucaGCAugaacguGGACGAGaGCg -3' miRNA: 3'- -UGCAGGCUCC--UACc---CGU-------CCUGUUC-CG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 144377 | 0.68 | 0.774424 |
Target: 5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3' miRNA: 3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 141299 | 0.68 | 0.774424 |
Target: 5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3' miRNA: 3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 81667 | 0.68 | 0.774424 |
Target: 5'- -gGUgCCGGGGAaGcGGCGGGACAaauuGGGg -3' miRNA: 3'- ugCA-GGCUCCUaC-CCGUCCUGU----UCCg -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 153611 | 0.68 | 0.774424 |
Target: 5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3' miRNA: 3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 156688 | 0.68 | 0.774424 |
Target: 5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3' miRNA: 3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 150533 | 0.68 | 0.774424 |
Target: 5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3' miRNA: 3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 147455 | 0.68 | 0.774424 |
Target: 5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3' miRNA: 3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 150502 | 0.68 | 0.773506 |
Target: 5'- cUGUCgGAGGcggagggcAUGGGUAGGAUAaaguucuccuucuGGGCc -3' miRNA: 3'- uGCAGgCUCC--------UACCCGUCCUGU-------------UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 57043 | 0.68 | 0.765186 |
Target: 5'- gGCGaagCCGccAGGGuUGaGGCGGGAgGGGGCc -3' miRNA: 3'- -UGCa--GGC--UCCU-AC-CCGUCCUgUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 145024 | 0.68 | 0.763325 |
Target: 5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3' miRNA: 3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 141946 | 0.68 | 0.763325 |
Target: 5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3' miRNA: 3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 157336 | 0.68 | 0.763325 |
Target: 5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3' miRNA: 3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 154258 | 0.68 | 0.763325 |
Target: 5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3' miRNA: 3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 151180 | 0.68 | 0.763325 |
Target: 5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3' miRNA: 3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 148102 | 0.68 | 0.763325 |
Target: 5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3' miRNA: 3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 155542 | 0.69 | 0.755835 |
Target: 5'- cGCGUCCGAGaGGgcguUGGaGcCGGGcucgcGCGGGGCg -3' miRNA: 3'- -UGCAGGCUC-CU----ACC-C-GUCC-----UGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 64553 | 0.69 | 0.755835 |
Target: 5'- -aGUCUcGGGuguUGGGCAGGaaGCAGGGg -3' miRNA: 3'- ugCAGGcUCCu--ACCCGUCC--UGUUCCg -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 111344 | 0.69 | 0.755834 |
Target: 5'- gGCGcaacCCGAGG-UGGGCAu--CAGGGCg -3' miRNA: 3'- -UGCa---GGCUCCuACCCGUccuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 36232 | 0.69 | 0.755834 |
Target: 5'- cCGgCCGGGGAgGaGGCAGGGC--GGCu -3' miRNA: 3'- uGCaGGCUCCUaC-CCGUCCUGuuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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