Results 61 - 80 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 95583 | 0.68 | 0.782633 |
Target: 5'- gGCGUCCGAGGucAUGuucaGCAugaacguGGACGAGaGCg -3' miRNA: 3'- -UGCAGGCUCC--UACc---CGU-------CCUGUUC-CG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 98233 | 0.66 | 0.869094 |
Target: 5'- gGCGUagCCGGGGugcaGGGC-GGACAgcacguccaacagaaAGGCc -3' miRNA: 3'- -UGCA--GGCUCCua--CCCGuCCUGU---------------UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 99547 | 0.67 | 0.818605 |
Target: 5'- -aGUCCGAGcccccgGGGCAGaGAuCGGGGUc -3' miRNA: 3'- ugCAGGCUCcua---CCCGUC-CU-GUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 99993 | 0.66 | 0.872704 |
Target: 5'- cGCGUCCucGGGAUcGGGagcGGGCAcgucgggAGGCg -3' miRNA: 3'- -UGCAGGc-UCCUA-CCCgu-CCUGU-------UCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 100710 | 0.7 | 0.65796 |
Target: 5'- gGCGcUgCGGGGGUGGGUguGGGACc-GGCc -3' miRNA: 3'- -UGC-AgGCUCCUACCCG--UCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 103099 | 0.73 | 0.518969 |
Target: 5'- uACuUCCGAGGcgGGGCAGaGCcuGGCc -3' miRNA: 3'- -UGcAGGCUCCuaCCCGUCcUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 103556 | 0.74 | 0.460862 |
Target: 5'- cCGgaccCCGAGGAUGGGCucgcccgggccuGGGCcGGGCu -3' miRNA: 3'- uGCa---GGCUCCUACCCGu-----------CCUGuUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 109186 | 0.66 | 0.880463 |
Target: 5'- -aGUCUGAGGcccagacagaGGGCuGGACu-GGCg -3' miRNA: 3'- ugCAGGCUCCua--------CCCGuCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 110874 | 0.7 | 0.686919 |
Target: 5'- uGCGUCUcGGGcucGGGCgcaggcgGGGACGGGGCc -3' miRNA: 3'- -UGCAGGcUCCua-CCCG-------UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 111344 | 0.69 | 0.755834 |
Target: 5'- gGCGcaacCCGAGG-UGGGCAu--CAGGGCg -3' miRNA: 3'- -UGCa---GGCUCCuACCCGUccuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 112720 | 0.71 | 0.61778 |
Target: 5'- gGCGUCCcuGAGGcccGUGuacaGGCAGGugguCGAGGCg -3' miRNA: 3'- -UGCAGG--CUCC---UAC----CCGUCCu---GUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 116045 | 0.66 | 0.87342 |
Target: 5'- cACGgcccgcugCUGGGGAUGGcGCAuGACAAauguGGCg -3' miRNA: 3'- -UGCa-------GGCUCCUACC-CGUcCUGUU----CCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 116752 | 0.66 | 0.866168 |
Target: 5'- ----aCGAGGAggaGGGCAGGG--GGGCc -3' miRNA: 3'- ugcagGCUCCUa--CCCGUCCUguUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 116819 | 0.66 | 0.893906 |
Target: 5'- gGCGUCC-AGGAcgUGuGcCGGGACGcGGCg -3' miRNA: 3'- -UGCAGGcUCCU--ACcC-GUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 117807 | 0.66 | 0.865432 |
Target: 5'- cGCcUCCGGacuagacGGA-GGGgAGGAgGAGGCg -3' miRNA: 3'- -UGcAGGCU-------CCUaCCCgUCCUgUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 118392 | 0.66 | 0.866169 |
Target: 5'- -gGUCUGcAGGAuaaacaUGGGCGGaGCAuGGCg -3' miRNA: 3'- ugCAGGC-UCCU------ACCCGUCcUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 120506 | 0.67 | 0.86172 |
Target: 5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3' miRNA: 3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 122219 | 0.68 | 0.798729 |
Target: 5'- gGCGggCGAGGGaggccggcgaagcaUGGGcCAGGAUucagAAGGCg -3' miRNA: 3'- -UGCagGCUCCU--------------ACCC-GUCCUG----UUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 123566 | 0.67 | 0.858714 |
Target: 5'- cACGUgCCGAGGAUGucuucCAGGACAAcaaGCu -3' miRNA: 3'- -UGCA-GGCUCCUACcc---GUCCUGUUc--CG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 125619 | 0.68 | 0.783539 |
Target: 5'- ---aCCGAGGGUgGGGCAuGGGCu-GGUg -3' miRNA: 3'- ugcaGGCUCCUA-CCCGU-CCUGuuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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