miRNA display CGI


Results 81 - 100 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 127836 0.71 0.61778
Target:  5'- aGCcUCCccugGAGGGUGGGCuuGGGCAGccGGCg -3'
miRNA:   3'- -UGcAGG----CUCCUACCCGu-CCUGUU--CCG- -5'
28837 3' -57.3 NC_006146.1 + 127952 0.67 0.851062
Target:  5'- aGCGUgcCCGGGGcggaGGGCAgGGACcGGGa -3'
miRNA:   3'- -UGCA--GGCUCCua--CCCGU-CCUGuUCCg -5'
28837 3' -57.3 NC_006146.1 + 128664 0.73 0.518969
Target:  5'- gACGg-CGGGGAcGGGCAGGAgAcaacGGGCg -3'
miRNA:   3'- -UGCagGCUCCUaCCCGUCCUgU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 135961 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 137031 0.66 0.880463
Target:  5'- ---cCCGGGGAgGaGGcCGGGugGGGGCc -3'
miRNA:   3'- ugcaGGCUCCUaC-CC-GUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 138810 0.67 0.849508
Target:  5'- -gGcCCGGGGuuggugagcuauUGGGCGcccGGACAGGGUu -3'
miRNA:   3'- ugCaGGCUCCu-----------ACCCGU---CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139130 0.67 0.826982
Target:  5'- gGC-UCCGA---UGGcGCAGGugGGGGCa -3'
miRNA:   3'- -UGcAGGCUccuACC-CGUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139361 0.69 0.704721
Target:  5'- gGCGgcgCCGGGGG-GGGUgccugcuguuuaguAGGAgAAGGCc -3'
miRNA:   3'- -UGCa--GGCUCCUaCCCG--------------UCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139409 0.66 0.872704
Target:  5'- gGCG-CCGGGGGaGGugccugcuguuuaGUAGGAgAAGGCc -3'
miRNA:   3'- -UGCaGGCUCCUaCC-------------CGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139963 0.75 0.409772
Target:  5'- cCGUCUGgcucaugggcAGGuGUGGGCAGGugGGGGUg -3'
miRNA:   3'- uGCAGGC----------UCC-UACCCGUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 140046 0.69 0.745426
Target:  5'- cACGUCCcugcguucuggugGAGGAgguugaacagGGGguGGugGAGGg -3'
miRNA:   3'- -UGCAGG-------------CUCCUa---------CCCguCCugUUCCg -5'
28837 3' -57.3 NC_006146.1 + 141209 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141299 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141434 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 141479 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 141723 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 141946 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 142325 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 143163 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 143640 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.