miRNA display CGI


Results 101 - 120 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 144287 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144377 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 144512 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 144557 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 144801 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 145024 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 145403 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 146241 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 146717 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 147365 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 147455 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 147590 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 147635 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 147879 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 148102 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 148481 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149319 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149795 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 150443 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 150502 0.68 0.773506
Target:  5'- cUGUCgGAGGcggagggcAUGGGUAGGAUAaaguucuccuucuGGGCc -3'
miRNA:   3'- uGCAGgCUCC--------UACCCGUCCUGU-------------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.