miRNA display CGI


Results 121 - 140 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 150533 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 150668 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 150712 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 150957 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 151180 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 151559 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152397 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152873 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 153521 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 153611 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 153745 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 153790 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154035 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 154258 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154637 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155475 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155542 0.69 0.755835
Target:  5'- cGCGUCCGAGaGGgcguUGGaGcCGGGcucgcGCGGGGCg -3'
miRNA:   3'- -UGCAGGCUC-CU----ACC-C-GUCC-----UGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155684 0.67 0.817758
Target:  5'- --uUCUGAGGAUggcccgguacugcGGGUucgAGGugAAGGCg -3'
miRNA:   3'- ugcAGGCUCCUA-------------CCCG---UCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155951 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 156599 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.