miRNA display CGI


Results 141 - 160 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 156688 0.68 0.774424
Target:  5'- gGCGgCUGGGGGUcGGGCuggccugccagGGGGCAaaggGGGCu -3'
miRNA:   3'- -UGCaGGCUCCUA-CCCG-----------UCCUGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 156823 0.66 0.887293
Target:  5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3'
miRNA:   3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5'
28837 3' -57.3 NC_006146.1 + 156868 0.66 0.887293
Target:  5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3'
miRNA:   3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 157336 0.68 0.763325
Target:  5'- cUGUCCGcgaGGGAgagucucuggccGGGCgggcgGGGACGGGGCu -3'
miRNA:   3'- uGCAGGC---UCCUa-----------CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 157714 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 158134 0.66 0.880463
Target:  5'- cGCGUCC-AGGuccGGCAGGuCAcagguGGGCu -3'
miRNA:   3'- -UGCAGGcUCCuacCCGUCCuGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 158554 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 161764 0.72 0.587728
Target:  5'- -gGUCCGAGG--GGGCGccuGGGCGGGGg -3'
miRNA:   3'- ugCAGGCUCCuaCCCGU---CCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 162394 0.66 0.865432
Target:  5'- cGCGcCCGGGaccccGGUGGGCcAGGAUgguggggAAGGUa -3'
miRNA:   3'- -UGCaGGCUC-----CUACCCG-UCCUG-------UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 167194 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 167310 0.69 0.727183
Target:  5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 167369 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 167498 0.7 0.697819
Target:  5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3'
miRNA:   3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 168126 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 168242 0.69 0.727183
Target:  5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 168301 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 168430 0.7 0.697819
Target:  5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3'
miRNA:   3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 169058 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 169174 0.69 0.727183
Target:  5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.